Apic016522.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphaenogaster picea
Gene Symbol
-
Assembly
GCA_003063865.1
Location
NJRM01000463.1:188794-191517[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 7e-05 0.0079 17.1 4.3 1 23 255 277 255 277 0.99
2 12 0.42 47 5.2 6.4 1 23 282 304 282 304 0.98
3 12 3e-05 0.0033 18.2 1.1 2 23 314 335 313 335 0.97
4 12 1e-05 0.0012 19.7 4.6 1 23 427 449 427 449 0.98
5 12 0.0002 0.023 15.6 1.3 1 22 454 475 454 478 0.91
6 12 9.6e-07 0.00011 22.9 0.7 1 23 517 540 517 540 0.96
7 12 1.9e-05 0.0021 18.8 2.6 1 23 571 593 571 593 0.99
8 12 0.00016 0.018 15.9 4.0 1 23 607 629 607 629 0.96
9 12 0.00015 0.017 16.0 4.7 1 23 635 657 635 657 0.98
10 12 0.00024 0.027 15.4 1.4 1 23 663 685 663 685 0.98
11 12 4.6e-05 0.0051 17.6 6.5 1 23 691 713 691 713 0.98
12 12 0.00021 0.024 15.5 0.3 1 21 719 739 719 740 0.93

Sequence Information

Coding Sequence
ATGTTGACGCGGGCGATTTCGGACACCAGCCTCTGCCGCGTCTGCCTGACCGTGGACCACAACAATCAGTGTATCTTCCGCAGGAACTGGGACGACCCGGGGAACCCCTCCGGGCTGTCGGAGAAGCTGCAGCTATGCTGCGGCGTGGAGGTCCTGGAAGATGATGGCTTGCCCACCAACATCTGCCTCGAGTGCGTGGTGAAAGTTAATGTCGCCTACGAATTGAGGAAACAATGCCAGAAGGCGGACGTAGAACTGAGGAAGCTGTACGGGAAAGCCTTGAGGACAAACGTTGCCAGCAATTGCATTCCTACAAAAGATCAGTGTTGTCAAACTGAGCAATCTTTTGTCTTGGATGTAATCAGTTTGGAGGACAATACAGACTTAAGTGTACATAATGAAGTTAAGGTAGAGAAAAATATGCAATCAAATATCATGAGACAAGGACAAATACCAGATACTTTCGAACAAACCAAGCATACCGAGGATGTTTTAGTAGATAATGAAATAGATTTAGACTGCGATAGTAAATATAAAGTAGAACAAGTAGAACATGACAAAATAGCTAAAAAGGATCTTTATAGAACGAGAAGATTAGCTATGTTTAAAAGGGTCACATCTATAGAAAATTTGAGGAATtataaagagagacagagacgaTATATCAAAAAGAGCGTGAACGTCAAACGCGACAGCAGTGATAGCGAGTATCAAACAAAGGTGAGAAATGTCCGCGGCAGAACGTCCGAACtcgaattacaatataaatgtcAGAAATGTGATAGATTTTATTCCAGTAAAAAGTCTTTAGATAGACACACGTCGACCCATAACGATAAAGAGTTCAAATGCGATAGCTGTGATAAGCAATTCTTCTGTCTGGATAAATTACATAAGCACATTAATCTGCACAGAGCGAAGGAGAAGCCGAAACCGGTGTCATGCAAAATCTGCAACAAGAGTTTCAGGAAGATCGACACCATGGTTAGGCACTTGAATACTCACAAGAAGGCATACCCCAAGGATGTTTTCTCTATATTGAAAGAGATACGGGACAagagaaaattggaaaataatCCAGAGTCTTTTGAAACGTCACTTACGATAGATGAAGACGAAGAAATGGCGCACGATGGACAGTTGTTACAAAGTGAAAACGATGGCACAACGAGAGAGCTAAGAAAACGAAACAATACGAGAGTGGAACAGAGAGACTCGGATTTGGTAAATAGCGACTCCAGCGATGACAAAACCGAGTCTTTCGACGATGCGTCGCTGTTCCGCTGCAAACATTGCAGCAAGAGTTATCGTACTGAAAGGTCGCTTCAACGTCATCTGCTAGTACACGACGAGAAGAAATACGTCTGCAACGTCTGCAATATGAAGTTTTTCCGACAAGACCGGCTCAAGAGCCACATGGATCGGTATGGTCACGACGAAACCAAGGTGTGCTTGGAGCCGCAGAAACCGCCTGATGACAAGTCGGCTATCAAGCTGATAAACACATGGATAAGGGAGGAGTTGGATTCCGATAACGAGGGCAAGGGCTTCCCGTGTAAAATCTGCGGAAAATCATATGATACGAAGAAGTCCTTGTTGAAACATCAAATGAACGCGCACGGCAGGCAAGACGAATGCTGCACGAGCTGCGGTGCCGTGTGTAATTGCGCGTACAAGGATCAGGAGAAGAGCAACGAAAAGTCGAAGCCGTACACCTGCGAGGAGTGTAACAAGTCGTTCGAGAAGGAGATCAAGCTGCACAAGCATCTGCGAATTCATGAACGCGCCAAGGAGCAGCAGGACGCGAACTTCAAGCGTTTTCTATGCCACATATGCAGCAAGACGTTCCGGCAGAACACCGGCCTCATGTTCCACATGAGAACGCACACGGGTTACAAGCCGCACGTGTGCAAGTACTGCGGCCGTGGCTTCACGTCCAACTCGAACTGCATCAATCACGAGAGGACCCACACGGGTGACCGGCCGTTCGTCTGTCAATACTGCAGTGCCGCATTCGCCAAATCGTGCACCCTCAAGGCACACATCACCACGCACACCGGCGAGGCGAATTATCACTGCAAGACCTGCGGCAAGTCGTTCCGTCGATTGAAGTACTTGAAGGAGCACAGATTCACGCACACGGGCGAAAAGCCGTATGCATGTAAAATTTGCGGCACCGCGTACAGTCATTCTGGCAGTCTGTTCGTACACGAGAAGAAGTGCAAGGCGCAGTACAATAATTATCAGCCGGGGGTTGCGCAAAACgcacaacagcagcaacagcagatCTCCTACAGTCAATCCCCTCAGACCACCGGCGGTATTTCCGTGGCGTCCACTTCTTCGGTTGTCACGCCTATCATCACCACGCTGCCTCAGGCTCACCTAAACGTCATTAATAGCAACGTACAGGCAAACAAGGGCTACATGGATAACGTTCAGCGAATGAACGCGCATGCAGCGGCTAACGCGACCACGATCGTCTCATCGGGTCTACACCCGAATGTCGACATGTCCGAAATGAGTTCTGCCGTCAGGAACTTCTCTATCATCGGACAGATGTTTCATTCTTAG
Protein Sequence
MLTRAISDTSLCRVCLTVDHNNQCIFRRNWDDPGNPSGLSEKLQLCCGVEVLEDDGLPTNICLECVVKVNVAYELRKQCQKADVELRKLYGKALRTNVASNCIPTKDQCCQTEQSFVLDVISLEDNTDLSVHNEVKVEKNMQSNIMRQGQIPDTFEQTKHTEDVLVDNEIDLDCDSKYKVEQVEHDKIAKKDLYRTRRLAMFKRVTSIENLRNYKERQRRYIKKSVNVKRDSSDSEYQTKVRNVRGRTSELELQYKCQKCDRFYSSKKSLDRHTSTHNDKEFKCDSCDKQFFCLDKLHKHINLHRAKEKPKPVSCKICNKSFRKIDTMVRHLNTHKKAYPKDVFSILKEIRDKRKLENNPESFETSLTIDEDEEMAHDGQLLQSENDGTTRELRKRNNTRVEQRDSDLVNSDSSDDKTESFDDASLFRCKHCSKSYRTERSLQRHLLVHDEKKYVCNVCNMKFFRQDRLKSHMDRYGHDETKVCLEPQKPPDDKSAIKLINTWIREELDSDNEGKGFPCKICGKSYDTKKSLLKHQMNAHGRQDECCTSCGAVCNCAYKDQEKSNEKSKPYTCEECNKSFEKEIKLHKHLRIHERAKEQQDANFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCQYCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNNYQPGVAQNAQQQQQQISYSQSPQTTGGISVASTSSVVTPIITTLPQAHLNVINSNVQANKGYMDNVQRMNAHAAANATTIVSSGLHPNVDMSEMSSAVRNFSIIGQMFHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00765856;
90% Identity
iTF_00128447;
80% Identity
iTF_00129949;