Apic001947.1
Basic Information
- Insect
- Aphaenogaster picea
- Gene Symbol
- -
- Assembly
- GCA_003063865.1
- Location
- NJRM01000292.1:11418-21223[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 6.8e-06 0.00076 20.2 1.0 1 23 208 230 208 230 0.98 2 32 0.0098 1.1 10.3 3.7 1 23 253 276 253 276 0.96 3 32 0.00066 0.075 14.0 0.5 2 23 283 305 282 305 0.96 4 32 0.0022 0.25 12.3 0.1 1 21 325 345 325 346 0.95 5 32 0.0086 0.97 10.5 0.1 2 23 443 464 442 464 0.95 6 32 0.022 2.5 9.2 0.6 5 23 474 493 470 493 0.90 7 32 0.0002 0.023 15.6 0.2 1 23 563 586 563 586 0.96 8 32 0.14 15 6.7 3.6 1 23 592 615 592 615 0.95 9 32 10 1.1e+03 0.8 1.0 1 23 628 650 628 650 0.93 10 32 0.0035 0.39 11.7 2.8 3 23 695 716 694 716 0.96 11 32 3.2 3.6e+02 2.4 0.4 1 23 749 772 749 772 0.92 12 32 0.0051 0.57 11.2 0.8 2 23 779 802 778 802 0.94 13 32 0.98 1.1e+02 4.0 0.0 2 23 811 833 811 833 0.90 14 32 0.028 3.2 8.9 0.0 2 23 840 862 839 862 0.93 15 32 9.7e-05 0.011 16.6 3.2 1 23 870 892 870 892 0.97 16 32 0.02 2.2 9.4 0.8 2 23 929 952 928 952 0.94 17 32 0.00023 0.026 15.4 3.3 1 23 955 978 955 978 0.97 18 32 0.00075 0.084 13.8 0.1 2 23 985 1007 984 1007 0.96 19 32 0.00099 0.11 13.4 3.9 1 21 1034 1054 1034 1055 0.95 20 32 0.0029 0.33 12.0 1.8 2 23 1069 1090 1068 1091 0.93 21 32 0.39 44 5.3 1.1 1 23 1094 1117 1094 1117 0.94 22 32 0.029 3.2 8.8 2.1 2 23 1124 1147 1123 1147 0.90 23 32 3.3 3.7e+02 2.3 0.2 2 23 1155 1177 1155 1177 0.94 24 32 0.7 78 4.5 0.0 2 23 1184 1206 1183 1206 0.93 25 32 0.25 28 5.9 2.7 2 23 1215 1237 1215 1237 0.96 26 32 0.73 82 4.4 0.4 2 23 1243 1265 1242 1265 0.91 27 32 0.018 2 9.5 0.1 1 23 1329 1352 1329 1352 0.95 28 32 9e-05 0.01 16.7 0.6 1 21 1380 1400 1380 1401 0.95 29 32 0.35 39 5.4 1.9 2 23 1502 1524 1501 1524 0.94 30 32 0.51 58 4.9 0.2 2 23 1531 1553 1530 1553 0.94 31 32 0.76 85 4.4 2.5 1 23 1564 1586 1564 1586 0.97 32 32 0.024 2.7 9.1 0.3 1 20 1590 1609 1590 1611 0.94
Sequence Information
- Coding Sequence
- ATGCACATATTCGGCCAGGAAGGCAAGAATCGTCAGCTCGTCGACAAGATCCAGACGTGTTTGCCGTTCAAGATAATGGAAGATGATTGTTTGCCAAAAGTCCTGTGTTATCGATGTATGTACAACTTGgaaaatttttatgactttaGGACTGCGTGTGTTAACGCAGCTGCTTGGTTGGAAAGATATAGGCCAAAAGAAGGCGCGAGCGATGACGGTGCAAATGACAGCGCACAATCCGGTGAGGTGCACGCGGAGCTTCTTAAAGGAAAGGAAAATATGCCAGTACTTATCCCAGAGGCACCCGTAGTCAATCCCAATGCGGCATTAGGTACACCACCGAGATTAAATTCTGACGGTGAAGCGGATCCCGAGATCGAAGAGATTCTCGACACAAGTGAAGGTACGGATGAAGCTACAGTAATCGATGATTCGGAAGATCGCCGATCGGAATATGAGATGGCATATGAGATGGACATGGAAACGAATCCTAGCGACTTTTTGGAAATGCCCCCAATGGTAACCGAGGAAAATGAAGAGGAGTGCGGTACAAACAACACGAGTGCCGCGACTACTCAAGATGCCGCGGTCTTTCCACATACGTCACAGCAACACGAAGTCTATGTCTGTTCTCTATGCAACAAAGCGTTTAGTTCCAAGGGTCACTTATCTCTGCACGCGAGGATTCATGTGGGTGAGGGTGACGTGATCGGCGAAAGAGTAATCACCGACGACCATACTTCATACCAACGACCGTATCAATGTGATCTTTGTCATAAATCGTATTCTACTGCGAAGCATCGTTGGGGACACGTTTCTACGACACATCGGGGACATCCTGCAGTAACGTGTGCGTACTGTTCTCGCATATACTCGACACGCTATAATCTCGATGAGCATATAAAATCGCGACACGCTGGTCTACCGCCACCCCCAGAATTATCGGTTCCCCTTTCCCGCACGGAAACTCGTTATCAGTGCCAAACATGTCCGACGGTATACACGGATCTAGCAGATTTCAATGCGCATCGTCAGATATGCCTCCAGGAACAACGTACAGATTTGTTGGGACAAACCGAAGTACAGAACAATAAGATTTTCGCCGATACATCCGACATCTCGAGTGTAGATTCGGACGACGAAAACAAAGACTTCAGAAACGCTGAGGCTAAATTGGCGAAAAATCCACAGTTAACTATATTGAAACAAGCGCTGACCAAAGGAGACAGTTTAAAACGAAATTTTGATGATGATGGTTCGACATCCAGCAACAAGCCGAAAAAAATAGTTAAGTCagAAGAGGGCGAGAATTCTCAGAAGAGATGGTATTGTGAAGCTTGTCCGCAAAGTTTTACATCTGTGGACAGTTTGAAGGAGCACGAGATTAGGCATGATGCCGAGAAGCCATTTCTTTGCATACTATGCAAGAAAGATTTTGTTTTGAAGTCTTCGTTAATTAGGCACATTACAATGTCGCATGGCGTTGATCCTACTCCTTTTGTCGAAAGTGATAAGTGTCTAAAGACAACTGTAATGCCTCAGAATTGGGACGATCGAGTGGACGTCAGCGTTTATGACCAAAGTGAAGTGAAAGACCCACTAGAGCTCTCGTCACCTGAGATAAATTTAGAGAATGATGACAAAGATTACAAGAACAGCCATGAGAACATAGAAATCGAAACGGTATTTGTATGTGAGACTTGTAAGAGAGACTTCAATGACCGAGCGTCATTATGGCTACACATACGAGCGATGCATAAAGAATATGCTGCATTTACCTGTGGAGTATGTTTAAAGATGTGCTTTAATAATACGCAACTTCAAAGTCATGTTTATAAGTATCACGGAAGGTCTAAGCTTTTAATATCGGAACAAAGAAGGTACAGTTGTATAATATGCGGTAGACAGCATGATTCGAGAAAAAAGCTAATCACTCATGTCTCAATACACAATATTGATTCTGCCTATGATCCTGCAActtatgtacaattaaatagtaattactATAATGAAAACTTGAATGGTAACGAAGGAAATGAACAAGTATTAGATTTTGATGGAGAAGCTGGGGAGAAGGTTGATTGTTACATTTGCTGCAAATCTTTTCCGACTGAGGATCATCTTATACGACATCAGAGAAATGCTCATAAGTCTGACCAGATGGCTTCATTAGGAGACGCTGCGGGTAGTGGAAATGCTCTAAATGTCAATGGTAATGGTAATAGGACGCAGTATCATTTATTCTTTGTTTGCGAGGTGTGTGGTAGTTCACATTCCAGCAAATGGGAACGCTGGTTGCATATTAACAACACGCATAACAACGAATCTTCTATTAAATGCGAATGGGAGAATTGCGGAAAAATATTTGCGACGAAATCATTGCGCAATGAGCACCTCCAGCATCATGCGGTACAAGGTCCCTCGCCAAATACCTGCGAGATATGTGGGAAATTGTGGCCTACTCGCGTCGATTATTGGAAACATGTGATGGGCGTGCATGCGGATACAGTGCCTCTAATTTGCGGCGTTTGTCTCAAAGTATTTTCCGACGTTATGCAATTAAGCGCACATGTGAAGGCGAAACATTGGCCGCTAACCAGCGGTGATTTCTGTTGTGATATTTGCGGTAGACCATATTCCAATAAATCGAAGATGTCTCGGCATAGAAAGATCCATGGTTTGGAGGCGGCTATGGACGCCGCATGCGATAATAGCAGTTTCAATGAAACAACCAATGAATCGGTGAAGCCTGATTACAGCAATGGCGCTTCGGAAATAGAGTTAAGTTGTGAGCAATGCCCTGAGCTCAGCTTCACAACGTTAGACAGTTTGTGTAATCATCGACGGATAGCGCACGGTCTTTTCCCATGCGATTTGTGTAACAAATGCTACGGCAGAACGTCGCATTTGTGGAAGCATGTAAACAGAGTGCACAAAGGACATGCAGACGTGACTTGTCCTTACTGCGCAAAGACAAGTGCATCAAGGGATCATCTGGCGGCACATATTGCCAAGATTCACAGGTTTATGCCCGCAATGGGCAAGGACAATCAGAACTGCATCACTTCCAAATCCCTGAGTGTAGAGGATGGTGTCTTGCATTATTGCGAGAAATGTAACAAGGGATTTCATAAGCGCTACTTGCTCCGTCGTCATATGAAAGGCTGTCAAAACTATCGTAAAGATCCCGGTGCATTGTTGACTCGTTGCCGGGCTTGCGAGAGGATATTCAAAGATCGTGCGAGTCTGCAGAAACACATTGAGAATCACCATAGCACATATACCTGCCACTTGTGTAACGAGACCATCACCTCCAAACTGGGCATCATGACGCACAATCGCGTCAATCACATGGATCATCCGGATCTGACGTGTGACCATCCAAGCTGTAAAAAGCTCTTCCGCACCAAAGAGGATCTGGAATCTCATCGAAAAGATCACAAGTATCATAGCAGTCCGAATGTTTGTGATTTTTGCGGTGACACTGTGGAAAATAAGTTGAAACTGAAAATGCATGTATTGTCGTTACATCGAAACGAGATCGGCGTGTCCTGTGGTGTCTGCCTCATTCCTATGAAGGATCCCAAAGATTTAAAGAAACATGTCGAAACGGAGCACAGCAGCGTTCTTTCCAATCCAAACACGTGTCAGGTATGTGGCAAGCAATACGCATCCAAATGGAAGGCTTTCGATCACACGAAGAAATGCCATGGAAAAGTTTTCCTCACATGTAAACAGTGTCTAGCAGTTTTTACGGACGAAAACGACATACGCGATCACTATGAACATGCGCATAACGTTCCGAAGGACCAATTAGCCATTTTCGAATATAGAATCGATATTGGTGCAAAGAGAGAAGGTTGCGAGACTCCCGATCAATATATCATTGTAAAGCAGGAACCGGATGATTTGGAATTTGACGAGGAAATGTGTGACGAGAGTTCGAACGACTCTCGCAAACGTATAAGATCGCCAAACGACACGTACGATTGCGAGATGTGTCCTGAGATCTTCCTCAATTCAGACACTCTTGCCAAGCATTATCAGAACGTCCATAATACCGACCCCGTCCGTATGTTCAAGAAATTCAAAAAGGATAATAGCGACAGCAAGCGcaagataaaaaacaaagacAATTTTGAATGCAAGAATTGCAAAAAGCAATTCTCTACCAGGAATCTATTATGGAATCACATCAATATATGTACACAGCGAAATTCGATAGGTAGATTTGATGTCCCGAATAATGTCCCGACATCGATTCTAGAGTCTCATCTGAAAAACAATAATCAGATTCAACGGGAAGAACCGGTACCATTAACGAACGAATCTAACTTGAACATTCCCGATTTCAATCTGTTCGAagatattaatttgcaattgTCGGCCCAGAAACCTGTGCCGAATCTTATGCCATTGTCGCAGATTAAGACATCGGGTAATGGCAAATGCTCGAGAAAAGATTCGCGTAAGGTGTATGATGAATCGACCAATACCGAGTGCACATGCGAAGTCTGTGGTAAACAATGGCCTGCCAAGAAGCATTTGTGGCAACATCTAATTCGTTTCCATCGCGCCGAAGCTGCTGTTACATGTGGCGTATGCTTGAAGTTGTGTACATCTTATGAAGATCTGGCCGACCATTTGAAGGCCGAACACGCGCCTGTTTTGTCACCGGAGGGCAACAATTTCACTTGTAAGACATGCGGTAGATATCACAATGCGAGAAGCAAATTGCTATTGCACATGAGCATCCATATCGGGAACTTCCGGTGTCAAAACTGCCAACAAGGTTTCGCAAGCGAGGAGAAACTCACCGAGCACACCACGAGTTGCAATGGCAAATTGGAATTTGAAGATCACGCAGTAGCGGACGAAGATAACGCAAAGAACGACAACGATGAGAAGGGCAGTTTAATCGCTGATGAAACATCGGTCATCGAGGAAACGGAGGAAGCGGATTTCGAATCGGAAGGCGAAAGGAGTAGGGATATCCACGATGAAGACAACTCGGAAAATAGCGAGGAAGACAATTCGGAAAATAGCGATGATTCAGATAGCGATAGTAATAGTAGTTCGAGCGAAGAGGAAAACGAGAATGAGgaaggagaggaagaagaggaggaagaagagaatgAAAATGAGTCGGATACGAGAACCACTAGTAGAGCGAGCGGTGACAGTGTGTCGTGTAATTCCGAGAGTGATGATGAATCGGATATGAATGAAGCGGAAGTAAGCGCGACAGAAAAGAAGGCGCTACAATTGAGCGATATCAGTAGATTCAGGATACACGGTATTCAAGAGACTATGTCGATGGAGGTGAATGTTAAAGACGAGAAACCCGATCTTACGTCCATTACTGTAGCGACAATTGCAGAACAAACTACACAATGTAATTTGAATGATCTTTTGATTTCTAATGTACCTGCGAACATGGATAAATTTGAGGCATTTCATCTCGAGGAATCCGCTAAAGCTACGACGAGCGATGTAGACTTTTCTGATGATAATGAAGACAATGGTGAAGACGATAACGAGGAAGATGATGAAAATGAAGAAGCGGAAGAAGATGGTGAAGAAGGTGGTGAGGATGAAGGTGAAGATGAGGAGGAAGGAGAAGCTGAGACTGAAGCTGAAAGTGAGAATGAGGATGAGGGCGAAGCTGCAGctgaggaagaggaagaagatgacgaagaggaagagaatgatgaagacgacgacgatggaCCGCCTGTGTTGAGCCCAATAATGCCTTTGTTACCAGAAAACGAATCGGAGGAGCACAGCGGTACGACAGATCGCACGAGACACAAACTCAGTCCGATGGTTCCGTTGAGTATAACTAAAATCGAACAGTGCGAGATAAAAACCGAAAGATCAAATGATGCGGAGAACGTGTCGAATGCGGCTAACTTCTTCGCGGCTAATAACAATGATTTACCCGTAACATGGGACGACAACTTGGATGATAACGGAGTCGACAATGGCGATTGCAACTTTGAAGATAGAGATGTGGTAAAATCCGAAGAATTCAGGGAGTACAAAATGGAAGTGAACGAGGGCGATGACTTTGTGGAGGATTCCGCGTATGAGAATGTAGTAGATAATAATGGAGAAGGTGATGAAGACAATCAAGTGCACGAGGTGCATAATCTGGATGGAACAGTGTTAATGGTGACTAATGACGCGGAAGGTAATCAGATTTTAATAGAACAAAACGTGTTAGATATCGATAACGAGGACTCTAATGCCGAAGCGGCGCAGTATATTTACCCAGAGAACGTTTACGAGATCGAGGAAGAAGATTATGTGGCGCGAAACGAAACCGACGTCATGCAGACGAATGAGATGCAAGGTAGTATGTCTTACGTTCAAGTTACGTCGGAGAATGAGGATAGTACGGAGGGTGACATTGAGGAGAACAGTAGTGATGTGCAGAAGCAGTAG
- Protein Sequence
- MHIFGQEGKNRQLVDKIQTCLPFKIMEDDCLPKVLCYRCMYNLENFYDFRTACVNAAAWLERYRPKEGASDDGANDSAQSGEVHAELLKGKENMPVLIPEAPVVNPNAALGTPPRLNSDGEADPEIEEILDTSEGTDEATVIDDSEDRRSEYEMAYEMDMETNPSDFLEMPPMVTEENEEECGTNNTSAATTQDAAVFPHTSQQHEVYVCSLCNKAFSSKGHLSLHARIHVGEGDVIGERVITDDHTSYQRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCAYCSRIYSTRYNLDEHIKSRHAGLPPPPELSVPLSRTETRYQCQTCPTVYTDLADFNAHRQICLQEQRTDLLGQTEVQNNKIFADTSDISSVDSDDENKDFRNAEAKLAKNPQLTILKQALTKGDSLKRNFDDDGSTSSNKPKKIVKSEEGENSQKRWYCEACPQSFTSVDSLKEHEIRHDAEKPFLCILCKKDFVLKSSLIRHITMSHGVDPTPFVESDKCLKTTVMPQNWDDRVDVSVYDQSEVKDPLELSSPEINLENDDKDYKNSHENIEIETVFVCETCKRDFNDRASLWLHIRAMHKEYAAFTCGVCLKMCFNNTQLQSHVYKYHGRSKLLISEQRRYSCIICGRQHDSRKKLITHVSIHNIDSAYDPATYVQLNSNYYNENLNGNEGNEQVLDFDGEAGEKVDCYICCKSFPTEDHLIRHQRNAHKSDQMASLGDAAGSGNALNVNGNGNRTQYHLFFVCEVCGSSHSSKWERWLHINNTHNNESSIKCEWENCGKIFATKSLRNEHLQHHAVQGPSPNTCEICGKLWPTRVDYWKHVMGVHADTVPLICGVCLKVFSDVMQLSAHVKAKHWPLTSGDFCCDICGRPYSNKSKMSRHRKIHGLEAAMDAACDNSSFNETTNESVKPDYSNGASEIELSCEQCPELSFTTLDSLCNHRRIAHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHADVTCPYCAKTSASRDHLAAHIAKIHRFMPAMGKDNQNCITSKSLSVEDGVLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVNHMDHPDLTCDHPSCKKLFRTKEDLESHRKDHKYHSSPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVETEHSSVLSNPNTCQVCGKQYASKWKAFDHTKKCHGKVFLTCKQCLAVFTDENDIRDHYEHAHNVPKDQLAIFEYRIDIGAKREGCETPDQYIIVKQEPDDLEFDEEMCDESSNDSRKRIRSPNDTYDCEMCPEIFLNSDTLAKHYQNVHNTDPVRMFKKFKKDNSDSKRKIKNKDNFECKNCKKQFSTRNLLWNHINICTQRNSIGRFDVPNNVPTSILESHLKNNNQIQREEPVPLTNESNLNIPDFNLFEDINLQLSAQKPVPNLMPLSQIKTSGNGKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCTSYEDLADHLKAEHAPVLSPEGNNFTCKTCGRYHNARSKLLLHMSIHIGNFRCQNCQQGFASEEKLTEHTTSCNGKLEFEDHAVADEDNAKNDNDEKGSLIADETSVIEETEEADFESEGERSRDIHDEDNSENSEEDNSENSDDSDSDSNSSSSEEENENEEGEEEEEEEENENESDTRTTSRASGDSVSCNSESDDESDMNEAEVSATEKKALQLSDISRFRIHGIQETMSMEVNVKDEKPDLTSITVATIAEQTTQCNLNDLLISNVPANMDKFEAFHLEESAKATTSDVDFSDDNEDNGEDDNEEDDENEEAEEDGEEGGEDEGEDEEEGEAETEAESENEDEGEAAAEEEEEDDEEEENDEDDDDGPPVLSPIMPLLPENESEEHSGTTDRTRHKLSPMVPLSITKIEQCEIKTERSNDAENVSNAANFFAANNNDLPVTWDDNLDDNGVDNGDCNFEDRDVVKSEEFREYKMEVNEGDDFVEDSAYENVVDNNGEGDEDNQVHEVHNLDGTVLMVTNDAEGNQILIEQNVLDIDNEDSNAEAAQYIYPENVYEIEEEDYVARNETDVMQTNEMQGSMSYVQVTSENEDSTEGDIEENSSDVQKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01355612;
- 90% Identity
- iTF_00126157;
- 80% Identity
- -