Apic013629.1
Basic Information
- Insect
- Aphaenogaster picea
- Gene Symbol
- -
- Assembly
- GCA_003063865.1
- Location
- NJRM01000536.1:293-2020[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-07 0.00013 22.1 0.0 2 42 16 56 15 58 0.89
Sequence Information
- Coding Sequence
- aTGGCTCGAAAGCAGAAAAGAAAAACAGCTAGAGGTAAAACTCCACCTGATGTTATGCTTAAAGCTGTCAGAGCTGTGAAAATACATAACCTATCAATCCGACAAGCTGCTTTAGAATTCGATACAAACTATCGTACATTATGTCGCTATTGCAAGAAGATTCCAGAGAAGGACTATCTATGTGAAAATATTACTACTCCAACAATTTCTGTGGGTTATGCTAAAGCTAGACAGATTTTTACTAACTCTCAAGAACAAGAATTGATAAATTACATTCTACGTGCTTCGGATATTTATTTTGGTCTCTCTCCCAAGCAAATTAGAGTTTTGGCTTATAATCTAGCGTGTAATAATTCAATTGAGATACCTGCATCctggattaaaaataaaatggcaGGAGAAGATTGGTTCAGTGCACTGATAAAACGTCACAGTAACATTTCCATACGAAAACCAGAAGCCACAAGTAAAGCAAGGGTGACAAGTTTCAACAGAACTaatgttgaattatttttcaaaaatttggaAAAGGTAATGTCTCGTCATCATTTTCAACCTCAAGATATTTGGAATATGGACGAAACTGGCATAACTACTGTCCAAGTGCCAGATAGAGTAGTTGCACGGAAAGattattttattgcatCTGCTCCATCTGGATCAAGTGGTACTGCAAACAAATCGGGTTGGATGCAAGAAGCCGACTTTCAgcaatttttgaaacatttccATGCTCATGCAAAATCCTCGATTGAAAAACCAGTTCTATTGCTGTTGGACAATCATAGTTCATATCTCAGTATTGAGAGTTTAAACTACGCAAAAGAAAATGGAATTGTGATGTTATCTTTTCCACCGCATTGTTCACACAAGTTACAACCTCTGGATAGAACAGTATTTGGAccctttaaaaaatatgtcaacTCTGCTTGTGATGCTTGGATATTAAATAACCCTAACCACACGATGAATATCTACAATATTCTTGAAGTTGTTGCTGTTGCCTACCCTCTTGCCATGACACCGACAAATACTCGAGCAGGCTTTAAATGTACTGGCATATTTCCTTataataaagacattttttcagATTTGGATTTTGCACCAAGTTTTATTACTGATAGGCCACCTCTTGAAGAAAATAAGAATAATGATAAACAGCAAGCCATGACAGAACATACAATAGACGTAGAAGCAACCAGTTCTTCAGAGTGCCATGTCTCTCAATCGTTTTCTGAAAAGTCAGACGaaggttttaaaatattaagccCTGAAGATCTCCGCCCTTTTCCTAAAGCTGGTCCACGGAAAAATCCTCGTAAGTGTGCAAGAAAACGAGTAACAGCAATTCTTACTGATACACCAGTAAAGAGAAAACTGGAGCTCGAAAAAATAGCAAGTAAGGAGAACAGAAATAAAGGGAAAAGTGTAAAAAGActatttgaagaaaataataaagagacAAAAACTAAATATGCTAAAAAATCCaaagaatttaaacaaatgacgAAATAtagaaaagttgcaaaaaaacaATAG
- Protein Sequence
- MARKQKRKTARGKTPPDVMLKAVRAVKIHNLSIRQAALEFDTNYRTLCRYCKKIPEKDYLCENITTPTISVGYAKARQIFTNSQEQELINYILRASDIYFGLSPKQIRVLAYNLACNNSIEIPASWIKNKMAGEDWFSALIKRHSNISIRKPEATSKARVTSFNRTNVELFFKNLEKVMSRHHFQPQDIWNMDETGITTVQVPDRVVARKDYFIASAPSGSSGTANKSGWMQEADFQQFLKHFHAHAKSSIEKPVLLLLDNHSSYLSIESLNYAKENGIVMLSFPPHCSHKLQPLDRTVFGPFKKYVNSACDAWILNNPNHTMNIYNILEVVAVAYPLAMTPTNTRAGFKCTGIFPYNKDIFSDLDFAPSFITDRPPLEENKNNDKQQAMTEHTIDVEATSSSECHVSQSFSEKSDEGFKILSPEDLRPFPKAGPRKNPRKCARKRVTAILTDTPVKRKLELEKIASKENRNKGKSVKRLFEENNKETKTKYAKKSKEFKQMTKYRKVAKKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00126637; iTF_00128127; iTF_00129668;
- 90% Identity
- iTF_00126637; iTF_00128127; iTF_00129668;
- 80% Identity
- -