Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 1.2e-10 1.4e-07 31.6 0.0 5 38 16 49 14 52 0.91

2 2 4.4 4.9e+03 -2.2 0.0 35 45 119 129 117 129 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	1.2e-10	1.4e-07	31.6	0.0	5	38	16	49	14	52	0.91
2	2	4.4	4.9e+03	-2.2	0.0	35	45	119	129	117	129	0.84

Coding Sequence: ATGAAGACAAAAAAGCAAGTAAGAGACAATGATGCTCAGTCATCATTGATAAATGCACTGCATGATGTTCGTCGAGGGATTCCGCTTAGACAAGCCAGCAAAAAGTATGGAATTTCAAAAAGTACGCTacacgataaattaaaaaacaaatcaaAAATTGACTCTACAATGGGACCATCGACCATTCTGTCTccagaagaagaaaaggagttACTTAACTGGATTTTTTATACCAGCGAAAGAGGCTTTCCGGTGACGAAGGATCAATTTTTAGATAGCGTGCAATTATTAATAGGTCAGTTGCAAAGAAAAAATCCTTTCACGATTAACAGGCCTGGACGTCACTGGTACGAGGCATTTATTCGTCGACACCCTGAGCTGTCACGTCGGATTGCGCAAAATTTAACAACTATAAGAGCATCAGTTACTGAAGATTGTTTAAGAAAGTGGTTTAATGAAGTTTGTCAGTACTTGCTACAGAAAGAACTGCTTTTAATTGATGCTTCACGGTACTTTAATTGCGACGAAAGCTCCTTTTTATTATGTCCAAAAGCAGAGCAAGTTATTGTCAAAAAAGGTGCTAAAtcagtatataaaattgtaaatgctgACGAAAAAGAGGCACTGACAACATTAGTAATGATTAGCGCTTCCGGAGTTATGGCACCTCCTATGATAATGTACGCTTATAAAAGAATACCAGCAATTATAACACTGAACATCCCGAAAGGCTGGAGCATTGGAACTTCAGACAAAGGATGGATGACTGCTGAGTCGTTTTATGAATATGTTACTAACGTATTCTACCCCTGGCTGAAAACCACTAACATTGTATTCCCCGTAGTATTATTTGTGGATGGTCATTCCTCGCATTT
Protein Sequence: MKTKKQVRDNDAQSSLINALHDVRRGIPLRQASKKYGISKSTLHDKLKNKSKIDSTMGPSTILSPEEEKELLNWIFYTSERGFPVTKDQFLDSVQLLIGQLQRKNPFTINRPGRHWYEAFIRRHPELSRRIAQNLTTIRASVTEDCLRKWFNEVCQYLLQKELLLIDASRYFNCDESSFLLCPKAEQVIVKKGAKSVYKIVNADEKEALTTLVMISASGVMAPPMIMYAYKRIPAIITLNIPKGWSIGTSDKGWMTAESFYEYVTNVFYPWLKTTNIVFPVVLFVDGHSSH

Sequence clustering based on sequence similarity using MMseqs2