Amia024815.1
Basic Information
- Insect
- Aphaenogaster miamiana
- Gene Symbol
- Zfy1
- Assembly
- GCA_003063725.1
- Location
- NJRN01000018.1:874174-878473[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.3e-05 0.0015 19.3 1.7 2 23 99 120 98 120 0.96 2 10 0.00071 0.08 13.9 2.5 1 23 126 148 126 148 0.98 3 10 0.012 1.4 10.0 2.3 1 23 155 178 155 178 0.97 4 10 0.0034 0.38 11.8 1.5 1 23 181 203 181 203 0.98 5 10 0.01 1.1 10.2 3.9 3 23 209 229 208 229 0.97 6 10 0.037 4.2 8.5 0.9 1 23 384 407 384 407 0.93 7 10 2.6e-05 0.003 18.4 5.4 1 23 412 434 412 434 0.98 8 10 0.38 43 5.3 5.6 1 21 443 463 443 465 0.94 9 10 8.7e-07 9.9e-05 23.0 4.1 1 23 470 492 470 492 0.97 10 10 0.00013 0.015 16.2 6.9 1 23 501 524 501 524 0.96
Sequence Information
- Coding Sequence
- ATGCAAGGTCCTTATGAGCTTGTCAAAGATggagataaaaataagattatagaACCACCGCGTTTTTCGCCGGAAGAAAAAGTGAAGGCTGCTGACGAATCTGCAGAGAAGCTTGAAGAATTGTATGAAGAAAAAGTGGAGATTGCTGACAAATCTGCGGAGACGCTTGAAGAATTGTATGAAGAAAAAGTGGAAGTTACTGACAAATCTGCGGAGAagcttgaaaaattatatgaagataaaaaagatgaatTGAATTTAGCATcagaaatatgtaataacaatttaaagCTTATGTGCCCTTATTGCTggaaaaattttgataacaatTGCGATCTGAAGACGCATATGACTGTTcataacaatttttatccatATAAATGCACAATTTGTGATCTACACCTAGAAACTAAGACATTATTTAAGTCTCATATGTTGTTACATGAAGACAATAAAGATTTCTTTCATTGTCCAGACTGCAGCTTTAAGTCTGCAAAGGTTTCGAGCCTTAAATATCATCAGATGAAATGGCATGACGTCTACAAGTGCCAGTTCTGCTCTGAATTATTCAAAAACAAAGCTGTATATCTGAAACATATGGAGCTCCACAATGCTACTACACTTTGCGATGTGTGTGGTCAGATATTTAAAGATGATTGTCATCTTACGCAACACAAATATAAACATCAGAATGATGAAAATGATATCCACAAGCAATTGCAACGTAAAGATGAATGTCAAGATGACGAGAAGCATTCAATAAAGATAAATGAGCCtgaaaaacttaatttacaaaaatacaataatgaGAGTCTTGACGAATTGAATCGCGATTTGGGTTTATTGAATGAAAAAAGGAAATCTGTTCTCGATCACACAgatgatgaaattttatatgaaactttTGGAGAAAGATGGGCACTACTAATAAAAGAACAATTAGAATTTGAAAAGATTAGGGATAAGGAACTACTTGCTAAGATAAAGGCTGATTCAGTAAAATTGTCAAGacatgtaattaaaaaagatatagtgGAAGACGTGGACAAAAAATTGCTCGGTGAAGCCATCGTCGACgacaaattttcttatattgacGAAGCGGACACAATGGAAGATGCACTTTACGAGAAACTTCCTCACGGACCTTACAAATGTAATATCTGTAAAACATTGTTCAAGCTAAAGACTGAAATATTGTACCACCTTGACAGTGAGCACAACTGTTGTCTCTTCAAATGCGTAATTTGCAGCAAGAGTTTCAAATTCAGACAGCATTTAAAGAAACACTACCTTGTCCATCAAGAGATGGATGCTAATTCGTTATACAGTTGCAGCAAGTGCGACTATCGTAGTAAATGGAAGGCCAATTTAAAAAAGCACTTCAGATGTCACGAAGAGTATCAATTTAATTGCGAATATTGTGGCAAATGCTTCAAGAAAAAATCGTACTTAGAATCGCACCTTAGCATCCACAATCCGCATTCAACAGAGGGGCCACATATCTGTGACATATGCGGAAAGGATTTCAAGAGGAGACATCATATGATCGATCATCGTAGGAAGAAACATCCAGATGCACACTTGTCATCATCTGTGCCTCTTGGAGAAAAACAGTAG
- Protein Sequence
- MQGPYELVKDGDKNKIIEPPRFSPEEKVKAADESAEKLEELYEEKVEIADKSAETLEELYEEKVEVTDKSAEKLEKLYEDKKDELNLASEICNNNLKLMCPYCWKNFDNNCDLKTHMTVHNNFYPYKCTICDLHLETKTLFKSHMLLHEDNKDFFHCPDCSFKSAKVSSLKYHQMKWHDVYKCQFCSELFKNKAVYLKHMELHNATTLCDVCGQIFKDDCHLTQHKYKHQNDENDIHKQLQRKDECQDDEKHSIKINEPEKLNLQKYNNESLDELNRDLGLLNEKRKSVLDHTDDEILYETFGERWALLIKEQLEFEKIRDKELLAKIKADSVKLSRHVIKKDIVEDVDKKLLGEAIVDDKFSYIDEADTMEDALYEKLPHGPYKCNICKTLFKLKTEILYHLDSEHNCCLFKCVICSKSFKFRQHLKKHYLVHQEMDANSLYSCSKCDYRSKWKANLKKHFRCHEEYQFNCEYCGKCFKKKSYLESHLSIHNPHSTEGPHICDICGKDFKRRHHMIDHRRKKHPDAHLSSSVPLGEKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00129251;
- 90% Identity
- iTF_00129251;
- 80% Identity
- -