Basic Information

Insect: Aphaenogaster miamiana
Gene Symbol: -
Assembly: GCA_003063725.1
Location: NJRN01000216.1:255475-258379[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.35 39 5.4 0.8 2 23 336 358 336 358 0.88

2 8 1.9e-06 0.00022 22.0 1.1 1 23 371 394 371 394 0.98

3 8 1.5e-05 0.0017 19.1 3.1 1 23 417 439 417 439 0.99

4 8 2.8e-05 0.0032 18.3 2.9 2 23 445 466 444 466 0.96

5 8 0.00012 0.014 16.3 6.8 1 23 472 494 472 494 0.98

6 8 0.00016 0.018 15.9 3.5 1 23 500 522 500 522 0.97

7 8 1.3e-05 0.0014 19.4 2.4 1 23 528 550 528 550 0.97

8 8 0.0017 0.19 12.7 4.3 1 20 556 575 556 576 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.35	39	5.4	0.8	2	23	336	358	336	358	0.88
2	8	1.9e-06	0.00022	22.0	1.1	1	23	371	394	371	394	0.98
3	8	1.5e-05	0.0017	19.1	3.1	1	23	417	439	417	439	0.99
4	8	2.8e-05	0.0032	18.3	2.9	2	23	445	466	444	466	0.96
5	8	0.00012	0.014	16.3	6.8	1	23	472	494	472	494	0.98
6	8	0.00016	0.018	15.9	3.5	1	23	500	522	500	522	0.97
7	8	1.3e-05	0.0014	19.4	2.4	1	23	528	550	528	550	0.97
8	8	0.0017	0.19	12.7	4.3	1	20	556	575	556	576	0.94

Sequence Information

Coding Sequence: ATGTGCGCACGAGTCCTGGCGTGTCCGCTGTGTTCGCAACCTGGATTCTTAACGCTTGATGCGCTACGAGCCGGACTTGTAAGTGTAGCGACTCGACCTCTCATATGTCCTGTCTGTAACGAGGTACTGTTAGGAATAGATAAATTAACTATACATCTGTTTGGTCACACGATCAATCTAAACAGTGGTACAGCGGAGTCGTCTAAACCTGCGGATGTCGCTGCCGCCAATGAGCATCTGGTCGCCGTCCACAACGCGCACAACGTTGCTCCGCAGGACTGGAATATATTGAAGCAATTAGGCAAAGCTGCAAGTGGCAACAATAGGACTTGCACACAGCCGTCAGATTCTGGTGTTCCGAATGTAGGGAACAATATCTCTGCTGTGGATTCTCAGCCTAAAGCGCAAAGTCAGAATTCATCGATGAAAGGTGCGAGTCAATCCAGTTTCGTATCAGATTATAATCATGACGTGATAAAAGTGAATATCCTACCGCAATCAAACGCAATCCAGAAAGCGACCGCAAATCTGCAAGGGGCATTGAAGACAAATTGTGCGGCGCAGTATTTTTGTAATGACAATATCAAACACTTGAACATACCCCAGGAAGCTATACAGGCGGAGAAAACAGCTATTTCAGATATAATTATTGCGACAAAAGTGGCAGGAACTGTAGATGCCAACATCTATCGAGATATTGGAAGGGAATGCATTGAATCAAACAGCGGTCAATGTGTCATAAAAGAAAGACTGATGGCAGATTTAATTGAGAAAGAACGTGACCTCCCTAATTTTCAATCAGTCCAGAATGTAATGGCAAATGTTTGTGCGAGAGAGTCACCAGAAGAGCACAACGGTAAGGAAGGCCTGCCTAGTGCGAAGAAGACGATGCTCGAGACGAATATCGGAgatcaaaatcaaaatttggAACATAGGCAAATGTTGCCTCACACGCAAACAAGTACCAAAACCTTCCATACGATAGCGCAGAAAGAAAAAATGGAAAGATGTAACGTATGCGGTTTTCACTTTCCTGACACTAATATCTTGACTTTACACAAACAATTAGTGCACGAGCAGGACTCAAATCCGGAGAAAGTTCTTAAGAATTACTCTTGCCATCTGTGCTCCAAGGTGTTCAAAATGCGAGGCAGTCTAATGGTGCATATGAGAGTAGCGCACATTGGACATAATTTAgGTTCTTTCCCTAAAGATGATCAAATTGAAGTCACATGCGGCGACACTGGGTACACATGTCCTACCTGCGGAAAGAAATTCAAGAAAGAGCAACACGTGGTACAACACTTGAAGACGCACGAGGGCAAACAATGGGAGTGTGATACTTGCAGTAAGATGTTCACGACGAAGTATTTTTTGAAGAAGCACAAACGACTGCACTCGGGAGAGATGCCgtacaaatgtaaaatatgcgACAAAAGCTTCACCTTCCAGCAATCATATCATAAGCACAGACTTTATCATAAGGACGATAAGCCACACACCTGCGCGACTTGCGGTAGATCATTCAAAGAACTTTCCACGTTACATAATCACGAAAGGATTCACACCGGAGAGAAGCCATTTGCATGCGAGACATGTGGAAAATGTTTCCGTCAACGTGTTTCGTACTTAGTCCATCGTCGAATTCACACAGGAGTGATGCCTTATAAATGCACAATGTGTGGCAAAAGCTTCCGATACAAGGTAAGTCAAAGAACTCATAAATGCCCTGTACAAATATCAGGCAGTACTCAGCAATTGATATCTGATACACGGGAGGCTGATAACAGAACAGTCAGGCCGCAGACCGCCGACATCCTGCAAGAAAGTCAATCGATCACAAACACTGTCGACAATGAGGAAAACAAGTTCGTGTTTATAATAAACGTCCAAGGACAACCTGTTTTAGCACTGCAGTCGGAGATAAATAACGTATCCTCTGAGAGAAAAGAACAAAGCATTGAATTTAGAGATGCCAGTAATACTAGCGAAGATTCAAAGAGCAAGACATGGGATATTAACGATCTTAATAACGCAAGACTCAAGGAGTCTGCGGAATCGATTGAGAGAGTGCAATCGGATGACGAAAAGATAAACGCAAAAAGCACGAACGATTTCTTTTCCATGGTGATGTCGCCCCTCGAAACTAGCATGTCATCGCCGACATTCGAAATGGAACATTTGAGAGTATCTTCGCCTAAACACAAAGAGGATCCCATAGACTCTTACACCGATTTCCCGCAGGTCTCCGACAATGTGCAAATAAATCTGGTAGAACCAGGCATAGGGCAAAGCTTCAGCCATAACAAGGCCGTCACCGACTCTTTGCAAACCATAAATGAAGAATCGTTGAAGGAATTACTGTATGGCATGGATAGAAAATGA
Protein Sequence: MCARVLACPLCSQPGFLTLDALRAGLVSVATRPLICPVCNEVLLGIDKLTIHLFGHTINLNSGTAESSKPADVAAANEHLVAVHNAHNVAPQDWNILKQLGKAASGNNRTCTQPSDSGVPNVGNNISAVDSQPKAQSQNSSMKGASQSSFVSDYNHDVIKVNILPQSNAIQKATANLQGALKTNCAAQYFCNDNIKHLNIPQEAIQAEKTAISDIIIATKVAGTVDANIYRDIGRECIESNSGQCVIKERLMADLIEKERDLPNFQSVQNVMANVCARESPEEHNGKEGLPSAKKTMLETNIGDQNQNLEHRQMLPHTQTSTKTFHTIAQKEKMERCNVCGFHFPDTNILTLHKQLVHEQDSNPEKVLKNYSCHLCSKVFKMRGSLMVHMRVAHIGHNLGSFPKDDQIEVTCGDTGYTCPTCGKKFKKEQHVVQHLKTHEGKQWECDTCSKMFTTKYFLKKHKRLHSGEMPYKCKICDKSFTFQQSYHKHRLYHKDDKPHTCATCGRSFKELSTLHNHERIHTGEKPFACETCGKCFRQRVSYLVHRRIHTGVMPYKCTMCGKSFRYKVSQRTHKCPVQISGSTQQLISDTREADNRTVRPQTADILQESQSITNTVDNEENKFVFIINVQGQPVLALQSEINNVSSERKEQSIEFRDASNTSEDSKSKTWDINDLNNARLKESAESIERVQSDDEKINAKSTNDFFSMVMSPLETSMSSPTFEMEHLRVSSPKHKEDPIDSYTDFPQVSDNVQINLVEPGIGQSFSHNKAVTDSLQTINEESLKELLYGMDRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00765903;
90% Identity: iTF_00129988;
80% Identity: -