Amia017721.1
Basic Information
- Insect
- Aphaenogaster miamiana
- Gene Symbol
- -
- Assembly
- GCA_003063725.1
- Location
- NJRN01002517.1:1556-4320[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.6 2.9e+02 2.7 0.6 1 14 5 18 5 20 0.87 2 17 6.2 7.1e+02 1.5 0.3 1 8 105 112 105 114 0.90 3 17 0.12 14 6.9 0.8 1 23 377 399 377 399 0.95 4 17 0.13 15 6.7 1.0 1 23 407 430 407 430 0.91 5 17 2.3e-06 0.00027 21.7 1.2 1 23 436 458 436 458 0.99 6 17 6.3 7.1e+02 1.5 6.2 1 23 535 557 535 557 0.93 7 17 0.0019 0.22 12.5 0.4 1 23 564 587 564 587 0.92 8 17 0.00026 0.029 15.3 3.9 1 23 593 615 593 615 0.98 9 17 0.42 48 5.2 5.0 1 23 621 643 621 643 0.97 10 17 7.9e-06 0.00089 20.0 1.4 1 23 648 670 648 670 0.96 11 17 0.022 2.5 9.2 1.1 1 23 683 706 683 706 0.92 12 17 6.6e-05 0.0075 17.1 2.0 1 23 722 745 722 745 0.96 13 17 0.00035 0.04 14.8 0.7 1 23 754 777 754 777 0.98 14 17 0.0067 0.76 10.8 2.7 1 23 783 805 783 805 0.97 15 17 0.00024 0.027 15.4 3.4 1 23 811 833 811 833 0.98 16 17 0.023 2.6 9.1 2.4 1 23 839 862 839 862 0.97 17 17 0.024 2.8 9.1 0.4 3 23 869 889 867 889 0.97
Sequence Information
- Coding Sequence
- atggagAATACATTTCCATGCCGTCTATGTggtattaaatttgaatttaaggattcaaaatatatctttgatgAAGCGACTAATTTGGCTCAGATAATAAATGAGACTTTACCAATTAAGgTCTCGCAAGATGATGATTCCAAATATATATGCTTAGCCTGTTATTTTCAAGTTACCggtcattatgattttattcaaACTGTATTGGCACACTCGATGAACAGTGAGACAAAAATCGTCTCTTTGTTTGAAgtcaataaaaatgagaaactgGAAAGTGTGGTAATTTCTAAAATGCACAGTGACATGATATATAACTGTCCGAATTGCAACAaagatttaatgattttaataagcACTTCTGAAGATAATAATCATGAGTTTCAAATTTCATTGATTGTTGTGGATCAAATAGAAAAATCAATAGAAGAAGATAATCAAACATCTGAAGATATAATGGAGCTTGTTGATGTCTGTACACACAAATCAAGTACAGAAGATGAATTACATGAACTGCCATTCAATCATAATATCATCAATGAGGATACGACAAATGACAACAAACGAGATATCAATCTGATACATGAAAACTCGCAAAAAGATACTAATCATACGAATTCTCATATTACATTGcaaaaaactaatatattacaTGAATCAAATAAAGGTACAAAGAGAAAGTTTCAAGAAAATGTTTCTACTAAAACATCTGTTAATCCAAGTAAGTTTCAAAAACTAGAagtaaaagatataaagaaacaAGAACCTGATGAATTATACAGTGATTCTGATAGATCAAGCATGGCTGGCTTAATAAACAATGGCATGGAATGTCTCAGTGAAGAAGAAAATAGTACGACGGAAAAGAAGCTCCTCAACAAGAATCTTACTAAATCGCAAAGATTAGAAACAAAATTAGATGCAAGGGAATcaaacaatgataatgatgagcCAAATGTAGCTGACTTGATAACATTCCAGCTAGAAAATGATGAATCGGTGATAGAATGCATCAGTGGTGTTGTAGAAGTTAGAGAAGATGATACAACGGATATGACGAAAACAGAAATAGAATGCATCAAACAGGATGATACAAATGACATCGACATTCCAAAAAGTAATATAAGACATATATGCGATTTGTGTGGAGCTCGTTATATTTCACAAGAAAAGTACGAATTTCACATGGAGAgacataaattaaacaaaatagacaaatatatttgtataatatgcgacaaaaaaactaaaaatgaaaacttGTTGTGGGATCACTACCTCCATACGCACAAGAGCCCAATGCGATATACTTGCTTGGACTGCGACAGAATATTCACGAAAAAACCAAATTTGAATGAACATCAGAAAAGACACATACATTCTGGTTACAAAATGATGCTAGATGTTGAAATGGATACGGTTAACGATCAGACGCAGAAGGTTATTACAAAACAAAAGCAAAAATGCACTGTTTGCAGAAAAGTAATAAAGGATATAGATCCTGATGCTATCAACGATCTAGCAACATGCGCCTCCTGCGAAGACTCCAGTGCATGTCTAATAGTCGACGGGGAAGCAGCAAAAGTAATTTCGCAGCGCCAATATCACTGTTTAAAGTGCCGTAAGCATTTTATGCGCCAGGAGAGACTTGAGTTCCACGAGATGCGACATAATGAGAATATGGACGAGTTTATCTGCAGCACATGCGGCAAGGAGTTCAGTGGGGAAAACTCTTTGTACGAACATTATCTCTTCGTGCACAAGGGGGCTAGACCACATGTTTGCGAAATATGCGGCAAGTCGTTTCAGCTGAAGGCGCGATTGAAGGAACACCATCGGAAGCATACGGGTGAGAAGCCCTATCAATGTGAAATATGCGGTCTACGTTGCATGACTACGCATGCATTGAAATTCCACAAGAAGTCTCATTTATCCCTTCGCCATGCATGTGACCTATGTGGCAAATCATTCATCAAGAAGCAGAACTTGAATGAACATCTGGAGAAGCACTGGAAGAAAGACAAGAACATATCACTTCCGCAAATATTTACGTGTTCCGTGTGCAAATACGAATTGCCGACTTTCCGCATGCTGAAGCATCACATGGTTGGGATCCATAAGCTCGACCGTCAGGACCCcttaataatgaaagaaaaaccATTGTACGAATGCGATGAGTGTCAAGAGAAGTTTAAACATCAAATGTCGCTCAAAGCACACAAGGAGAAGGTGCACGAGGGCAAAATTATGCCTCGTATATTTCAGTGCGATGTATGCAAAGCTGTATACAAGGTCAAGCAGAAGCTAATAAATCACATTAAGAGCAAGCACAGCGACGAGAAACGATACAAATGTGCGCAGTGCAAAATGAGATTCACGGATATTAAAACCCTGTATCACCACGTTTTACTACACACTGGTAGGAAACCGTTCACCTGTGAGTATTGCAACACGAGTTTCAGGCGACGAGATTCCAGGGACATTCATCGCCGTAAACACACGAACGATCGACCTTACCAGTGCACAGATTGCAACAGCTCGTTCGGTAGCTACACCAGTCGCTCGAACCATCGCAAGAAGGTACATGGGGATAACGAGACCGACTGTCCAGACTGCGGAGAGAAATGTGGCGATATGCAGGAAATCAGAATTCACCTGAATAAGCATCTTGGCGAAAAATTGAGCGAATTAGAATCCACGTAA
- Protein Sequence
- MENTFPCRLCGIKFEFKDSKYIFDEATNLAQIINETLPIKVSQDDDSKYICLACYFQVTGHYDFIQTVLAHSMNSETKIVSLFEVNKNEKLESVVISKMHSDMIYNCPNCNKDLMILISTSEDNNHEFQISLIVVDQIEKSIEEDNQTSEDIMELVDVCTHKSSTEDELHELPFNHNIINEDTTNDNKRDINLIHENSQKDTNHTNSHITLQKTNILHESNKGTKRKFQENVSTKTSVNPSKFQKLEVKDIKKQEPDELYSDSDRSSMAGLINNGMECLSEEENSTTEKKLLNKNLTKSQRLETKLDARESNNDNDEPNVADLITFQLENDESVIECISGVVEVREDDTTDMTKTEIECIKQDDTNDIDIPKSNIRHICDLCGARYISQEKYEFHMERHKLNKIDKYICIICDKKTKNENLLWDHYLHTHKSPMRYTCLDCDRIFTKKPNLNEHQKRHIHSGYKMMLDVEMDTVNDQTQKVITKQKQKCTVCRKVIKDIDPDAINDLATCASCEDSSACLIVDGEAAKVISQRQYHCLKCRKHFMRQERLEFHEMRHNENMDEFICSTCGKEFSGENSLYEHYLFVHKGARPHVCEICGKSFQLKARLKEHHRKHTGEKPYQCEICGLRCMTTHALKFHKKSHLSLRHACDLCGKSFIKKQNLNEHLEKHWKKDKNISLPQIFTCSVCKYELPTFRMLKHHMVGIHKLDRQDPLIMKEKPLYECDECQEKFKHQMSLKAHKEKVHEGKIMPRIFQCDVCKAVYKVKQKLINHIKSKHSDEKRYKCAQCKMRFTDIKTLYHHVLLHTGRKPFTCEYCNTSFRRRDSRDIHRRKHTNDRPYQCTDCNSSFGSYTSRSNHRKKVHGDNETDCPDCGEKCGDMQEIRIHLNKHLGEKLSELEST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00127706;
- 90% Identity
- iTF_00126220;
- 80% Identity
- -