Basic Information

Insect: Aphaenogaster miamiana
Gene Symbol: -
Assembly: GCA_003063725.1
Location: NJRN01000256.1:184009-187948[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0099 1.1 10.3 0.6 3 23 256 276 254 276 0.90

2 13 0.74 85 4.4 0.2 1 21 281 301 281 304 0.82

3 13 0.0002 0.023 15.6 0.8 3 23 318 339 317 339 0.96

4 13 0.015 1.7 9.7 0.5 3 23 352 372 352 372 0.98

5 13 1.2e-07 1.4e-05 25.7 1.4 2 23 399 420 398 420 0.97

6 13 0.02 2.3 9.3 0.4 1 23 425 448 425 448 0.81

7 13 0.2 22 6.2 1.8 2 23 516 537 516 537 0.97

8 13 0.00076 0.087 13.8 2.1 1 19 546 564 546 566 0.96

9 13 0.36 41 5.4 0.2 5 20 583 598 581 599 0.92

10 13 0.015 1.7 9.7 2.4 1 22 603 624 603 624 0.95

11 13 2.4e-05 0.0027 18.5 1.0 1 23 650 672 650 672 0.99

12 13 0.054 6.2 8.0 0.0 1 23 736 759 736 759 0.98

13 13 5.8e-07 6.5e-05 23.6 5.9 1 23 764 787 764 787 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0099	1.1	10.3	0.6	3	23	256	276	254	276	0.90
2	13	0.74	85	4.4	0.2	1	21	281	301	281	304	0.82
3	13	0.0002	0.023	15.6	0.8	3	23	318	339	317	339	0.96
4	13	0.015	1.7	9.7	0.5	3	23	352	372	352	372	0.98
5	13	1.2e-07	1.4e-05	25.7	1.4	2	23	399	420	398	420	0.97
6	13	0.02	2.3	9.3	0.4	1	23	425	448	425	448	0.81
7	13	0.2	22	6.2	1.8	2	23	516	537	516	537	0.97
8	13	0.00076	0.087	13.8	2.1	1	19	546	564	546	566	0.96
9	13	0.36	41	5.4	0.2	5	20	583	598	581	599	0.92
10	13	0.015	1.7	9.7	2.4	1	22	603	624	603	624	0.95
11	13	2.4e-05	0.0027	18.5	1.0	1	23	650	672	650	672	0.99
12	13	0.054	6.2	8.0	0.0	1	23	736	759	736	759	0.98
13	13	5.8e-07	6.5e-05	23.6	5.9	1	23	764	787	764	787	0.98

Sequence Information

Coding Sequence: ATGGCTGCGGGCACCAAGTGGGACAAGGTCTGCCGACTGTGCTCGGAGGAGAGGAACGAGATGCTGCCCATCTTCGGCGACGAGGGCCTGCAGCGCAGGGTGGCGCAGAAGCTGCGCGCCTGCCTGCCCGTGCTTGTGTACACGTCCGATCCGCTGCCGAAGCAGATCTGCCAGTTCTGCGCGGCGAGGTTGGACGACGCGTACGAGTTCAGGGAGTACTGCCTGAACGTCTACAGGAGCATGCACGCCGTGTTGCTGAGGTACAAGACGGAGTCTGCCCAGATATTTCTCGACGCGATGAGGAACTCGTCGGACCCGTGCCAGGTGCAACTCTGCAAGGAAAAGTCCAGAGCTCCACCGGCGTTGGTTCCTTTATCAACTACCCTGTCCTTTGACGACTCGGCGACACCGATTAATCAAGCTAATCAGGACCATCTCCAAAGTGCCTGCATGGAAACCTTGTCTGAATTACCATGCGAGGTGGAAATCAAAGAGATGAATACGGACCCAATTTTGAGTGCCGAAACCGTTTGCGAACCGTTAAATAAGAAGCGCAAACTGTCGGAGATGTTTAGCACGGATATGCAGATAAATATGGAATCCACTCCTATATTTGACATGGAAGGGATGAGAGCTCTTAGGCCGGACTATCAAACCAAGAAGGATGAGAAACGAACCAGTATTCTGGAACAAGTGCTGACCGGCAGTCTGACGATGAATAATCACCAGAAGTTGCAATCCACAAAATTAACTTCCGAATGGCGGTGCGCACCATGCAACAATTATTACAAAACGAAAGATAGTCTAATGAAACATATGCAATTGCACTGCCCGCGTGTATATACTTGTAGAAAGTGCTCCGCGTCCTTCGAATCCGTTGAAATCTTAGCGAAACACGAAGCCAATAACCATTTAAAAGTCAAGTTGGATTTCACGGAAAACTTGAACGATTGTGATCAGTGCGACCGGCAATTCATAAGCTGGAAAATGCTGAAGCAGCACAGACTGCGCGATCATCTGGCCGAATTGACCGAGATCGGAAGTAATACGTGGTGTTCATTGTGCAATAgATTCTTCCCTACGATAGAATCTTATCAAAGTCACGTCCAGTTACATCAAACAGGCTCGACGGGGACAAAGATAGCGAGAGAGATTACACGAGAAGAGCAATACTATGAAAACGTAAAATCTCTCATGTGTCCCACTTGTGGAAAGGTTTGTACCCAGCAGAGTGCATTATCGAATCACATGCGCACTCATGAACCGAAGAAACACAAATGCGACATTTGCGGCCGATCATTCGGACTTTTTATACGCCTGGCTGGACACAGAATAACCGAGCATAATGAACAACCAATGATGTCACCAGTTTTGTCGGCGGTCGAACAAGAGGAGGCTCTAAATGCTGAGAGGGAAGCGAGGGAAGCAAGGGAAGCAAAGACTCGCGGTGTCAAGAAATCTTATACCGAGATGGAGAAGAATGACGTCCCGGTAGATGACGAATCTCTAGCAAAACACATTTCTGGTGGACTTAAAAACGTGGCAAGATGCGGCATTTGCTCACAATGGTTCAGCGATCACACGACAATGTTAACGCATCTTCAGACGCACTCGGACAGTTATTCCCATAAAAGTTACGTGTGTCAtgtatgtaaaaaatcatttaaggAACATTCGCGGCTGTTAAAGCACGAGGCTTGTCATAAACGCCTAACGCTCGATAATGCCTCACTGTACACATCCGCTGTTTGCAACAAATCATTCATGGATAAGGCGCATCAAAAGACGCACACGGTGGATAAAACCTATCACTGTGCGAAgtgtaataaaatctttttcaaaGAAGTATCGCTACTCGCCCATCAATGCACGGGCGGAGCACCGCTTGGAAAGAAAGTCACCGCGAAGTCTCGGCAGAAGACGTCGCCTTATGTTGGCAACAAGACATACAAGTGTTCTAAATGTGATGCGACTTTTGCGAGCTCGCAGTCAAGAAACGCTCACATGAAAATGCACGCCGAGTACATGCGTGGCAGTACGGCGCAAACACGCGAGATTAAAGTCAAAGCGGACGACGAACCGATGCCAAAATTGCGTCCGGAGACACTGGAATACGTATCTCCTATCGAGCCGAAGATTGAAATTAACGAGCAGAGTACACCACCTCCACCTCTTAAACGGACCCTCATTAAAACTGCTAGCGGATATCGCTGCGGTGTATGCCAGTCACCGTTTGTGTTTAGGGAGCTAGCCGTGGCGCATTTGAGATCCGCACATCCTGTGATGCCATATCAGTGCCCTTATTGCAAAAAACGCTTCACGACACAGTACACGTTTACCCATCATATCAAGACAGAGCATCCCGATGAGCCTGAGAAATGA
Protein Sequence: MAAGTKWDKVCRLCSEERNEMLPIFGDEGLQRRVAQKLRACLPVLVYTSDPLPKQICQFCAARLDDAYEFREYCLNVYRSMHAVLLRYKTESAQIFLDAMRNSSDPCQVQLCKEKSRAPPALVPLSTTLSFDDSATPINQANQDHLQSACMETLSELPCEVEIKEMNTDPILSAETVCEPLNKKRKLSEMFSTDMQINMESTPIFDMEGMRALRPDYQTKKDEKRTSILEQVLTGSLTMNNHQKLQSTKLTSEWRCAPCNNYYKTKDSLMKHMQLHCPRVYTCRKCSASFESVEILAKHEANNHLKVKLDFTENLNDCDQCDRQFISWKMLKQHRLRDHLAELTEIGSNTWCSLCNRFFPTIESYQSHVQLHQTGSTGTKIAREITREEQYYENVKSLMCPTCGKVCTQQSALSNHMRTHEPKKHKCDICGRSFGLFIRLAGHRITEHNEQPMMSPVLSAVEQEEALNAEREAREAREAKTRGVKKSYTEMEKNDVPVDDESLAKHISGGLKNVARCGICSQWFSDHTTMLTHLQTHSDSYSHKSYVCHVCKKSFKEHSRLLKHEACHKRLTLDNASLYTSAVCNKSFMDKAHQKTHTVDKTYHCAKCNKIFFKEVSLLAHQCTGGAPLGKKVTAKSRQKTSPYVGNKTYKCSKCDATFASSQSRNAHMKMHAEYMRGSTAQTREIKVKADDEPMPKLRPETLEYVSPIEPKIEINEQSTPPPPLKRTLIKTASGYRCGVCQSPFVFRELAVAHLRSAHPVMPYQCPYCKKRFTTQYTFTHHIKTEHPDEPEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00126946;
90% Identity: iTF_00126946;
80% Identity: iTF_00126946;