Basic Information

Insect: Aphaenogaster miamiana
Gene Symbol: -
Assembly: GCA_003063725.1
Location: NJRN01000124.1:274698-279777[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.36 41 5.4 6.6 2 23 299 321 298 321 0.97

2 18 0.13 15 6.7 3.9 1 23 370 392 370 392 0.97

3 18 0.17 19 6.4 1.3 1 23 441 463 441 463 0.98

4 18 0.047 5.4 8.1 0.1 1 20 511 530 511 532 0.91

5 18 0.00048 0.055 14.4 1.4 1 23 572 594 572 594 0.98

6 18 0.0005 0.056 14.4 0.4 1 23 641 663 641 663 0.96

7 18 0.00056 0.063 14.2 0.1 1 23 669 691 669 691 0.97

8 18 1e-05 0.0011 19.7 0.4 1 23 735 758 735 758 0.96

9 18 0.00035 0.039 14.9 2.6 1 23 764 787 764 787 0.97

10 18 5.1e-06 0.00058 20.6 1.0 2 23 795 817 794 817 0.97

11 18 0.00015 0.017 16.0 0.0 1 23 825 847 825 847 0.93

12 18 0.074 8.4 7.5 0.3 1 20 907 926 907 926 0.97

13 18 7.8e-05 0.0089 16.9 0.2 2 23 946 967 945 967 0.97

14 18 3.9e-05 0.0045 17.8 0.8 1 23 980 1002 980 1002 0.96

15 18 1.7e-05 0.0019 19.0 3.7 1 23 1024 1047 1024 1047 0.97

16 18 0.0013 0.14 13.1 1.6 2 23 1107 1129 1106 1129 0.96

17 18 0.0018 0.2 12.6 1.9 1 23 1151 1174 1151 1174 0.93

18 18 0.0066 0.75 10.8 0.2 2 23 1266 1288 1266 1288 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.36	41	5.4	6.6	2	23	299	321	298	321	0.97
2	18	0.13	15	6.7	3.9	1	23	370	392	370	392	0.97
3	18	0.17	19	6.4	1.3	1	23	441	463	441	463	0.98
4	18	0.047	5.4	8.1	0.1	1	20	511	530	511	532	0.91
5	18	0.00048	0.055	14.4	1.4	1	23	572	594	572	594	0.98
6	18	0.0005	0.056	14.4	0.4	1	23	641	663	641	663	0.96
7	18	0.00056	0.063	14.2	0.1	1	23	669	691	669	691	0.97
8	18	1e-05	0.0011	19.7	0.4	1	23	735	758	735	758	0.96
9	18	0.00035	0.039	14.9	2.6	1	23	764	787	764	787	0.97
10	18	5.1e-06	0.00058	20.6	1.0	2	23	795	817	794	817	0.97
11	18	0.00015	0.017	16.0	0.0	1	23	825	847	825	847	0.93
12	18	0.074	8.4	7.5	0.3	1	20	907	926	907	926	0.97
13	18	7.8e-05	0.0089	16.9	0.2	2	23	946	967	945	967	0.97
14	18	3.9e-05	0.0045	17.8	0.8	1	23	980	1002	980	1002	0.96
15	18	1.7e-05	0.0019	19.0	3.7	1	23	1024	1047	1024	1047	0.97
16	18	0.0013	0.14	13.1	1.6	2	23	1107	1129	1106	1129	0.96
17	18	0.0018	0.2	12.6	1.9	1	23	1151	1174	1151	1174	0.93
18	18	0.0066	0.75	10.8	0.2	2	23	1266	1288	1266	1288	0.94

Sequence Information

Coding Sequence: ATGGACGAGGACGTGGTGGAGATCGAGAACGTGGAGAGTGTGTGCAGACTGTGCCTTTCCACGGACGAGCCTCGATCCTCGGTGTTCGCGACgcacgaggaggaggaggtggagaagAAGGACTCTGGCGTGCCGCTGGCCGCCAAGATTCAGGCCTGCTTGTCGATCCagatttcagCAACCGATAAGTTGTCCACGCTGATATGCGCAAATTGCGTGAAAAATGTGAATCAATGGCATACTTACAAAGAGTCGTGTCTGCGTTCCCAGGAAAAGCTACTAGAATGGCTGGCAAATCAATTGCAATCAAATCCTACGGTTGCAACGATCAAGGATGAACCAATGGACTTGGATTATGAAGATAATGTAGAGATTATCTCAGAGATCACCAATAATTTGGAACAATcaCATCCACCAACTCAGACAGTGGAAAACGATGAATCTAGTAATGAGAAGGTACAAGAGGTAACAGATAATAACGATGCGAGTAATGAGAAAATGCAAGAGGTAACAGATAATAACGATGCgagtaatgaaaaaatacaagagGTAACAGATAATAACGATACGAGTGATACTAATAAAGACCCTGAACCAATTTCGTCTGCAGTGGAAAAGGAAACTGACAAGGAAGAAAATCAAACAGATCAGCAAGATGTAATTCTATGTTCTGTTAAAAGCGAGCCACAGGATGATGACGATAGCGACTGTACCATAGAAGTAGAATCGAATAGTAGTGAATTGCTATTGAATCCTATGGCAGTCGCCGAGACAGAGGACACAGTCATGGAGGCTGATTCCACGCAGAAGTCTAGCGCGGCTGGCGCACCACCGAGGAAGAAATTGAGACGCGGTCCTCACACTCACTTCAGAGGAACACGTGTTTTTAAGCAGAAGTGCACGCACTGCCAGATATTCTTGCATTCTAAGTACACATACATAAAGCACATGCAGCGGTTCCATAGTAAAGAAAACGGCATCGAGAATTCAGAGTTGCAGAACGATGAGGAGGAGATGATCGAGGATCTGGAAGATGAATTGGTCAGTATGGAGAAGGACTCACCGCTGACGCAAGTCCAACAGGACATTATTAGCCAACTGAAAACTTTTTCATGCTACTCTTGCGAGCAGTCGTTTAATGATCGACGCAGCACTCTTTCTCACATACGTCATCATCTGCCGGATCTGAGGCCGTACACGTGTATCGCCTGCCTGACAGAATTCCCTGATCGAGCGCTGTACCAGGTACACTGCGCAGCTTCCTTTGAATGCGCCATGAAGATCGCCCTAGTCATACCGAAGCACGGTGACGAACGATACTTTACATGCAACATGTGCCTGCGCTCAATGAAGGGTAGAAAGGAGTTGCTCAGTCACTTGTCGAAGCACTCTGACAAACAATACGAAGAAATGATAGGACCGACGCGAGCCCCGCCCAAACTAAAGCCGATGGCGCCGTTACCCTCTACGAAAAACAGTATCCCCAAGATGAGTATCGGACCTTACAAGAACGGCGATCCAGCACATAATCACGCTTGCGATCTGTGCGGCATGATCTATCGATACCGACCCAATATGATTAAGCACAAAGAGATGTGCATGCAGCTGAAGCCGGAAAACAGAACATTGTACAAATGCGTGCATTGTTCCATGACGTACCTTGTGTTTAAGAAGTTTCATTATCACATTACGGCCGATCACAAGAAGAAAGATTTTACTTGTCCCATGTGCTATTCCAAATTCCGATCGCCTAGTGATTTCCTGACCCATTACGAGACTCATCGCGCGACAGTGCAAGACAATCGGCAAATGCAGCATGACAGTACCTCGCAGAACGCGGTTCAAACACCATTGAAAGAACGTAATGCTTTCGAAGTAAATGCCAAGTCAAGAATGAGCTCGCGAATGTCAAGTCAGAAGTACAGCTGTCCTCTTTGTGCCCAGGAGTTTTCCACGAAGAACGAGCTGAACGAGCACCGGACCCTCCATCTTAAAGTAAAGATATACTCGTGCGCCATTTGCCGCAGTATGTTCAGCAGCGCTGGTGCCTTGGAGATCCATATGAAGGATCACGGTATCGAGGACCCGAACGAAAGGAACGCCAACATTTCCTGCGTGGAATACGGCAGTTTGGATGAGGACGTGAGGATTGAGAAAGATTCGATAAATACCAGTGCCATCTCGGATCCTGGTACACAGATTCATGAATGTGGCGAGTGCGGTAAGGTATTATCCAGTTACGCTAATCTCCGGCGACATACTAAAATTGCTCACCGAAACTCTAAGACGTACGAGTGTAACGAGTGCTCGCGAATGTTTATGCGTAAAGATCTGTACGATCATCATATGCAAATCAAGCACAATTGTAAGAAGACAATGCTGCAATGTCCGCAGTGTCCTAAGAGTTTTGTCTTCCAATCAAACTTCACTTATCACTTCCGTACTGCTCATCTTGAGAAATCACAGAACGGTTACGCCTGCGATATCTGCGGCAAAGTTTTCGTTGAAGAAGCGTCTTTGAAAATACACAGGGGCTGGCATAATCGCGCCAATTCGCGTCTGAGCACTCGATTTATATTGGGCAATCAGAAGGCATCCAATGAGAAGCAGAAGGAATCCAACAGTGTCGCGTCTGGTGAGAATTCAGAACGGCCAGCAAGAGCACGGAAGTCTTTCCCTAATCCTCCACCTCAATCGCCAGCGACAACCTCGGGAAATTTCCAATGTCAAGTATGTAATGACAAATTCAACGATGTCACAGAACTGAGGACTCATCTGTGGGATGTTCACTGCGCCCGCAACAAACCGGAAAAGAGTTTCTCTATCGACGAGCTTCAGTGCGAACTTTGCACGAACGTTTTCCCTGATCAGGAAACCTTGACATCTCATATGCGATGGCACAAGGCCAATCCTATTCTCAGTGACATACAAAAGGTGTTTGCCTGCGATGTATGCGGCAAGTCCTACAGTTCGAAGAAGGTTTTATGGAAGCACAAGAAGCTTCACAAGGCTACCGTTGTAGCCTCGATCAAGTTCCAATCTTTGGCCAGAAAACCGATGGCTACACAGTTCCAATGTAATTTCTGCCGCAAAGTCTTTTCGAGCAGTCAGTCTCTGCAACGACACAAACTCACCTTCCACAGTGAGTCGCAGAATCAACAACGTGCTCGGCAACAGCTGTACAATACCGATCGATTACTGTCGTTTGAAGAAGAACCGAGGGCAAAGCGCTTAAAGGTCGAAATCGAAAATGACGATTCACAGACCAAGCTATCGCCTTTCGCCATGGACTTTGCCGGCGAAAAAAGAAAACCGGTCATGTGTCACGTTTGCAAGAAAATGTTCCCCAATATGAGTGTGCTGTACAAGCACAAGCAGACAGTCCACAAGACCGGTGCAAAAAAAGATTCGATACCTCAGTGCATACCGATGTCGACTCAGGATGGCAAGTTTTCATGCAACATCTGCTTCAAGGAATTCCCCCGTCTGTCGAGACTGCGACAGCATTTTACGATCAAGCACAAGAAGACGTCTGGAGCCGGCAGCGTCTCGAATAATAACAAATTGCTCCCGAAACCTGAGAGTAAACCGCGACCAAAAGAGTACGAAGTACAGGCCTATCACAATAACGTGATGTACAGCTGCAAGCTGTGCAAGCAGTGCCATGTTTTCAACAAGGAGTCCATCATGAGCCATATCACCAACGTGCACAATACAGTGTATCAAGCCGACAGCAAGACGTTCCACAGGGAGGTCAATCTGGCCACTTATGTAGTGAAGGATGCAATCGGAGCTACCTGCCCGCTATGCGACGTCAAGTATCCTAACAACAGGGCTCTGAAGATACACTACGTTAAGTTCCACGATAATGCCGATTAA
Protein Sequence: MDEDVVEIENVESVCRLCLSTDEPRSSVFATHEEEEVEKKDSGVPLAAKIQACLSIQISATDKLSTLICANCVKNVNQWHTYKESCLRSQEKLLEWLANQLQSNPTVATIKDEPMDLDYEDNVEIISEITNNLEQSHPPTQTVENDESSNEKVQEVTDNNDASNEKMQEVTDNNDASNEKIQEVTDNNDTSDTNKDPEPISSAVEKETDKEENQTDQQDVILCSVKSEPQDDDDSDCTIEVESNSSELLLNPMAVAETEDTVMEADSTQKSSAAGAPPRKKLRRGPHTHFRGTRVFKQKCTHCQIFLHSKYTYIKHMQRFHSKENGIENSELQNDEEEMIEDLEDELVSMEKDSPLTQVQQDIISQLKTFSCYSCEQSFNDRRSTLSHIRHHLPDLRPYTCIACLTEFPDRALYQVHCAASFECAMKIALVIPKHGDERYFTCNMCLRSMKGRKELLSHLSKHSDKQYEEMIGPTRAPPKLKPMAPLPSTKNSIPKMSIGPYKNGDPAHNHACDLCGMIYRYRPNMIKHKEMCMQLKPENRTLYKCVHCSMTYLVFKKFHYHITADHKKKDFTCPMCYSKFRSPSDFLTHYETHRATVQDNRQMQHDSTSQNAVQTPLKERNAFEVNAKSRMSSRMSSQKYSCPLCAQEFSTKNELNEHRTLHLKVKIYSCAICRSMFSSAGALEIHMKDHGIEDPNERNANISCVEYGSLDEDVRIEKDSINTSAISDPGTQIHECGECGKVLSSYANLRRHTKIAHRNSKTYECNECSRMFMRKDLYDHHMQIKHNCKKTMLQCPQCPKSFVFQSNFTYHFRTAHLEKSQNGYACDICGKVFVEEASLKIHRGWHNRANSRLSTRFILGNQKASNEKQKESNSVASGENSERPARARKSFPNPPPQSPATTSGNFQCQVCNDKFNDVTELRTHLWDVHCARNKPEKSFSIDELQCELCTNVFPDQETLTSHMRWHKANPILSDIQKVFACDVCGKSYSSKKVLWKHKKLHKATVVASIKFQSLARKPMATQFQCNFCRKVFSSSQSLQRHKLTFHSESQNQQRARQQLYNTDRLLSFEEEPRAKRLKVEIENDDSQTKLSPFAMDFAGEKRKPVMCHVCKKMFPNMSVLYKHKQTVHKTGAKKDSIPQCIPMSTQDGKFSCNICFKEFPRLSRLRQHFTIKHKKTSGAGSVSNNNKLLPKPESKPRPKEYEVQAYHNNVMYSCKLCKQCHVFNKESIMSHITNVHNTVYQADSKTFHREVNLATYVVKDAIGATCPLCDVKYPNNRALKIHYVKFHDNAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00129189;
90% Identity: iTF_00129189;
80% Identity: -