Amia022456.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphaenogaster miamiana
Gene Symbol
-
Assembly
GCA_003063725.1
Location
NJRN01000129.1:535304-545243[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 6.9e-06 0.00079 20.2 1.0 1 23 256 278 256 278 0.98
2 31 0.01 1.1 10.3 3.7 1 23 301 324 301 324 0.96
3 31 0.00067 0.077 14.0 0.5 2 23 331 353 330 353 0.96
4 31 0.0023 0.26 12.3 0.1 1 21 373 393 373 394 0.95
5 31 0.0088 1 10.4 0.1 2 23 491 512 490 512 0.95
6 31 0.023 2.6 9.1 0.6 5 23 522 541 518 541 0.90
7 31 0.00021 0.023 15.6 0.2 1 23 611 634 611 634 0.96
8 31 0.14 16 6.7 3.6 1 23 640 663 640 663 0.95
9 31 0.0035 0.4 11.7 2.8 3 23 743 764 742 764 0.96
10 31 3.2 3.7e+02 2.4 0.4 1 23 797 820 797 820 0.92
11 31 0.0051 0.59 11.2 0.8 2 23 827 850 826 850 0.94
12 31 0.99 1.1e+02 4.0 0.0 2 23 859 881 859 881 0.90
13 31 0.029 3.2 8.8 0.0 2 23 888 910 887 910 0.93
14 31 9.9e-05 0.011 16.6 3.2 1 23 918 940 918 940 0.97
15 31 0.02 2.3 9.3 0.8 2 23 977 1000 976 1000 0.94
16 31 0.00023 0.026 15.4 3.3 1 23 1003 1026 1003 1026 0.97
17 31 0.00076 0.086 13.8 0.1 2 23 1033 1055 1032 1055 0.96
18 31 0.001 0.11 13.4 3.9 1 21 1082 1102 1082 1103 0.95
19 31 0.003 0.34 11.9 1.8 2 23 1117 1138 1116 1139 0.93
20 31 0.4 45 5.2 1.1 1 23 1142 1165 1142 1165 0.94
21 31 0.029 3.3 8.8 2.1 2 23 1172 1195 1171 1195 0.90
22 31 3.4 3.8e+02 2.3 0.2 2 23 1203 1225 1203 1225 0.94
23 31 0.71 81 4.4 0.0 2 23 1232 1254 1231 1254 0.93
24 31 0.25 28 5.9 2.7 2 23 1263 1285 1263 1285 0.96
25 31 0.74 84 4.4 0.4 2 23 1291 1313 1290 1313 0.91
26 31 0.018 2.1 9.4 0.1 1 23 1377 1400 1377 1400 0.95
27 31 9.2e-05 0.01 16.7 0.6 1 21 1428 1448 1428 1449 0.95
28 31 0.35 40 5.4 1.9 2 23 1550 1572 1549 1572 0.94
29 31 0.52 59 4.9 0.2 2 23 1579 1601 1578 1601 0.94
30 31 0.77 87 4.3 2.5 1 23 1612 1634 1612 1634 0.97
31 31 0.025 2.8 9.0 0.3 1 20 1638 1657 1638 1659 0.94

Sequence Information

Coding Sequence
ATGGCGACGATATCGACGACTActgcgacgtcgacgtcgacgtcaacGGCCACGGCGACCAAGAGCGCGACAGTGATGGCGACGGAGCCGAGGAAATCTTATCACGAGCTGTGTCGCCTGTGCGCTTCCTACGACGCCGTTAGGATGCACATATTCGGCCAGGAAGGCAAGAATCGTCAGCTCGTCGACAAGATCCAGACGTGTTTGCCGTTCAAGATAATGGAAGATGATTGTTTGCCAAAAGTCCTGTGTTATCGATGTATGTACAACTTGgaaaatttttatgactttAGGACTGCGTGTGTTAACGCAGCTGCTTGGTTGGAAAGATATAGGCCAAAAGAAGGCGCGAGCGATGACGGTGCAAATGACAGCGCACAATCCGGTGAGGTGCACGCGGAGCTTCTTAAAGGAAAGGAAAATATGCCAGTACTTATCCCAGAGGCACCCGTAGTCAATCCCAATGCGGCATTAGGTACACCACCGAGATTAAATTCTGACGGTGAAGCGGATCCCGAGATCGAAGAGATTCTCGACACAAGTGAAGGTACGGATGAAGCTACAGTAATCGATGATTCGGAAGATCGCCGATCGGAATATGAGATGGCATATGAGATGGACATGGAAACGAATCCTAGCGACTTTTTGGAAATGCCCCCAATGGTAACCGAGGAAAATGAAGAGGAGTGCGGTACAAACAACACGAGTGCCGCGACTACTCAAGATGCCGCGGTCTTTCCACATACGTCACAGCAACACGAAGTCTATGTCTGTTCTCTATGCAACAAAGCGTTTAGTTCCAAGGGTCACTTATCTCTGCACGCGAGGATTCATGTGGGTGAGGGTGACGTGATCGGCGAAAGAGTAATCACCGACGACCATACTTCATACCAACGACCGTATCAATGTGATCTTTGTCATAAATCGTATTCTACTGCGAAGCATCGTTGGGGACACGTTTCTACGACACATCGGGGACATCCTGCAGTAACGTGTGCGTACTGTTCTCGCATATACTCGACACGCTATAATCTCGATGAGCATATAAAATCGCGACACGCTGGTCTACCGCCACCCCCAGAATTATCGGTTCCCCTTTCCCGCACGGAAACTCGTTATCAGTGCCAAACATGTCCGACGGTATACACGGATCTAGCAGATTTCAATGCGCATCGTCAGATATGCCTCCAGGAACAACGTACAGATTTGTTGGGACAAACCGAAGTACAGAACAATAAGATTTTCGCCGATACATCCGACATCTCGAGTGTAGATTCGGACGACGAAAACAAAGACTTCAGAAACGCTGAGGCTAAATTGGCGAAAAATCCACAGTTAACTATATTGAAACAAGCGCTGACCAAAGGAGACAGTTTAAAACGAAATTTTGATGATGATGGTTCGACATCCAGCAACAAGCCGAAAAAAATAGTTAAGTCagAAGAGGGCGAGAATTCTCAGAAGAGATGGTATTGTGAAGCTTGTCCGCAAAGTTTTACATCTGTGGACAGTTTGAAGGAGCACGAGATTAGGCATGATGCCGAGAAGCCATTTCTTTGCATACTATGCAAGAAAGATTTTGTTTTGAAGTCTTCGTTAATTAGGCACATTACAATGTCGCATGGCGTTGATCCTACTCCTTTTGTCGAAAGTGATAAGTGTCTAAAGACAACTGTAATGCCTCAGAATTGGGACGATCGAGTGGACGTCAGCGTTTATGACCAAAGTGAAGTGAAAGACCCACTAGAGCTCTCGTCACCTGAGATAAATTTAGAGAATGATGACAAAGATTACAAGAACAGCCATGAGAACATAGAAATCGAAACGGTATTTGTATGTGAGACTTGTAAGAGAGACTTCAATGACCGAGCGTCATTATGGCTACACATACGAGCGATGCATAAAGAATATGCTGCATTTACCTGTGGAGTATGTTTAAAGATGTGCTTTAATAATACGCAACTTCAAAGTCATGTTTATAAGTATCACGGAAGGTCTAAGCTTTTAATATCGGAACAAAGAAGGTACAGTTGTATAATATGCGGTAGACAGCATGATTCGAGAAAAAAGCTAATCACTCATGTCTCAATACACAATATTGATTCTGCCTATGATCCTGCAACTTATGTACAATTAAATAGTAATTACTATAATGAAAACTTGAATGGTAACGAAGGAAATGAACAAGTATTAGATTTTGATGGAGAAGCTGGGGAGAAGGTTGATTGTTACATTTGCTGCAAATCTTTTCCGACTGAGGATCATCTTATACGACATCAGAGAAATGCTCATAAGTCTGATCAGATGGCTTCATTAGGAGACGCTGCGGGTAGTGGAAATGCTCTAAATGTCAATGGTAATGGTAATAGGACGCAGTATCATTTATTCTTTGTTTGCGAGGTGTGTGGTAGTTCACATTCCAGCAAATGGGAACGCTGGTTGCATATTAACAACACGCATAACAACGAATCTTCTATTAAATGCGAATGGGAGAATTGCGGAAAAATATTTGCGACGAAATCATTGCGCAATGAGCACCTCCAGCATCATGCGGTACAAGGTCCCTCGCCAAATACCTGCGAGATATGTGGGAAATTGTGGCCTACTCGCGTCGATTATTGGAAACATGTGATGGGTGTGCATGCGGATACAGTGCCTCTAATTTGCGGCGTTTGTCTCAAAGTATTTTCCGACGTTATGCAATTAAGCGCACATGTGAAGGCGAAACATTGGCCGCTAACCAGCGGTGATTTCTGTTGTGATATTTGCGGTAGACCATATTCCAATAAATCGAAGATGTCTCGGCATAGAAAGATCCATGGTTTGGAGGCGGCTATGGACGCCGCATGCGATAATAGCAGCTTCAATGAAACAACCAATGAATCGGTGAAGCCTGATTACAGCAATGGCGCTTCGGAAATAGAGTTAAGTTGTGAGCAATGCCCTGAGCTCAGCTTCACAACGTTAGACAGTTTGTGTAATCATCGACGGATAGCGCACGGTCTTTTCCCATGCGATTTGTGTAACAAATGCTACGGCAGAACGTCGCATTTGTGGAAGCATGTAAACAGAGTGCACAAAGGACATGCAGACGTGACTTGTCCTTACTGCGCAAAGACAAGTGCATCAAGGGATCATCTGGCGGCACATATTGCCAAGATTCATAGGTTTATGCCCGCAATGGGCAAGGACAATCAGAACTGCATCATTTCCAAATCCCTGAGTGTAGAGGATGGTGTCTTGCATTATTGCGAGAAATGTAACAAGGGATTTCATAAGCGCTACTTGCTCCGTCGTCATATGAAAGGCTGTCAAAACTATCGTAAAGATCCCGGTGCATTGTTGACTCGTTGCCGGGCTTGCGAGAGGATATTCAAAGATCGTGCGAGTCTGCAGAAACACATTGAGAATCACCATAGCACATATACCTGCCACTTGTGTAACGAGACCATCACCTCCAAACTGGGCATCATGACGCACAATCGCGTCAATCACATGGATCATCCGGATCTGACGTGTGACCATCCAAGCTGTAAAAAGCTCTTTCGCACCAAAGAGGATCTGGAATCTCATCGAAAAGATCACAAGTATCATAGCAGTCCGAATGTTTGTGATTTTTGCGGTGACACTGTGGAAAATAAGTTGAAACTGAAAATGCATGTATTGTCGTTACATCGAAACGAGATCGGCGTGTCCTGTGGTGTCTGCCTCATTCCTATGAAGGATCCCAAAGATTTAAAGAAACATGTCGAAACGGAGCACAGCAGCGTTCTTTCCAATCCAAACACGTGTCAGGTATGTGGCAAGCAATACGCATCCAAATGGAAGGCTTTCGATCACACGAAGAAATGCCATGGAAAAGTTTTCCTCACATGTAAACAGTGTCTAGCAGTTTTTACGGACGAAAACGACATACGCGATCACTATGAACATGCGCATAACGTTCCGAAGGACCAATTAGCCATTTTCGAATATAGAATCGATATTGGTGCAAAGAGAGAAGGTTGCGAGACTCCCGATCAATATATCATTGTAAAGCAGGAACCGGATGATTTGGAATTTGACGAGGAAATGTGTGACGAGAGTTCGAACGACTCTCGCAAACGTATAAGATCGCCAAACGACACGTACGATTGCGAGATGTGTCCTGAGATCTTCCTCAATTCAGACACTCTTGCCAAGCATTATCAGAACGTCCATAATACCGACCCCGTCCGTATGTTCAAGAAATTCAAAAAGGATAATAGCGACAGCAAGCGCAAGATAAAAAACAAAGACAATTTTGAATGCAAGAATTGCAAAAAGCAATTCTCTACCAGGAATCTATTATGGAATCACATCAATATATGTACACAGCGAAATTCGATAGGTAGATTTGATGTCCCGAATAATGTCCCGACATCGATTCTAGAGTCTCATCTGAAAAACAATAATCAGATTCAACGGGAAGAACCGGTACCATTAACGAACGAATCTAACTTGAACATTCCCGATTTCAATCTGTTCGAAGATATTAATTTGCAATTGTCGGCCCAGAAACCTGTGCCGAATCTTATGCCATTGTCGCAGATTAAGACATCGGGTAATGGCAAATGCTCGAGAAAAGATTCGCGTAAGGTGTATGATGAATCGACCAATACCGAGTGCACATGCGAAGTCTGTGGTAAACAATGGCCTGCCAAGAAGCATTTGTGGCAACATCTAATTCGTTTCCATCGCGCCGAAGCTGCTGTTACATGTGGCGTATGCTTGAAGTTGTGTACATCTTATGAAGATCTGGCCGACCATTTGAAGGCCGAACACGCGCCTGTTTTGTCACCGGAGGGCAACAATTTCACTTGTAAGACATGCGGTAGATATCACAATGCGAGAAGCAAATTGCTATTGCACATGAGCATCCATATCGGGAACTTCCGGTGTCAAAACTGCCAGCAAGGTTTCGCAAGCGAGGAGAAACTCACCGAGCACACCACGAGTTGCAATGGCAAATTGGAATTTGAAGATCACGCAGTAGCGGACGAAGATAACGCAAAGAACGACAACGATGAGAAGGGCAGTTTAATCGCTGATGAAACATCGGTCATCGAGGAAACGGAGGAAGCGGATTTCGAATCGGAAGGCGAAAGGAGTAGGGATATCCACGATGAAGACAACTCGGAAAATAGCGAGGAAGACAATTCGGAAAATAGCGATGATTCAGATAGCGATAGTAATAGTAGTTCGAGCGAAGAGGAAAACGAGAATGAggaaggagaggaagaagaagaggaagaagagaatgAAAATGAGTCGGATACGAGAACCACTAGTAGAGCGAGCGGTGACAGTGTGTCGTGTAATTCCGAGAGTGATGATGAATCGGATATGAATGAAGCGGAAGTAAGCGCGACAGAAAAGAATGCGCTACAATTGAGCGATATCAGTAGATTCAGGATACACGGTATTCAAGAGACTATGTCGATGGAGGTGAATGTTAAAGACGAGAAACCCGATCTTACGTCCATTACTGTAGCGACAATTGCAGAACAAACTACACAATGTAATTTGAATGATCTTTTGATTTCTAATGTACCTGCGAACATGGATAAATTTGAGGCATTTCACCTCGAGGAATCCGCTAAAGCTACGACGAGCGATGTAGACTTTTCTGATGATAATGAAGACAATGGTGAAGACGATAACGAGGAAGATGATGAAAATGAAGAAGCGGAAGAAGATGGTGAAGAAGGTGGTGAGGATGAAGGTGAAGATGAGGAGGAAGGAGAAGCTGAGACTGAAGCTGAAAGTGAGAATGAGGATGAGGGCGAAGCTGCAGctgaggaagaggaagaagatgacgaagaggaagagaatgatgaagacgacgacgatggaCCGCCTGTGTTGAGCCCAATAATGCCTTTGTTACCAGAAAACGAATCGGAGGAGCACAGCGGTACGACAGATCGCACGAGACACAAACTCAGTCCGATGGTTCCGTTGAGTATAACTAAAATCGAACAGTGCGAGATAAAAACCGAAAGATCAAATGATGCGGAGAACGTGTCGAATGCGGCTAACTTCTTCGCGGCTAATAACAATGATTTACCCGTAACATGGGACGACAACTTGGATGATAACGGAGTCGACAATGGCGATTGCAACTTTGAAGATAGAGATGTGGTAAAATCCGAAGAATTCAGGGAGTACAAAATGGAAGTGAACGAGGGCGATGACTTTGTGGAGGATTCCGCGTATGAGAATGTAGTAGATAATAATGGAGAAGGTGATGAAGACAATCAAGTGCACGAGGTGCATAATCTGGATGGAACAGTGTTAATGGTGACTAATGACGCGGAAGGTAATCAGATTTTAATAGAACAAAACGTGTTAGATATCGATAACGAGGACTCTAATGCCGAAGCGGCGCAGTATATTTACCCAGAGAACGTTTACGAGATCGAGGAAGAAGATTATGTGGCGCGAAACGAAACCGACGTCATGCAGACGAATGAGATGCAAGGTAGTATGTCTTACGTTCAAGTTACGTCGGAGAATGAGGATAGTACGGAGGGTGACATTGAGGAGAACAGTAGTGATGTGCAGAAGCAGTAG
Protein Sequence
MATISTTTATSTSTSTATATKSATVMATEPRKSYHELCRLCASYDAVRMHIFGQEGKNRQLVDKIQTCLPFKIMEDDCLPKVLCYRCMYNLENFYDFRTACVNAAAWLERYRPKEGASDDGANDSAQSGEVHAELLKGKENMPVLIPEAPVVNPNAALGTPPRLNSDGEADPEIEEILDTSEGTDEATVIDDSEDRRSEYEMAYEMDMETNPSDFLEMPPMVTEENEEECGTNNTSAATTQDAAVFPHTSQQHEVYVCSLCNKAFSSKGHLSLHARIHVGEGDVIGERVITDDHTSYQRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCAYCSRIYSTRYNLDEHIKSRHAGLPPPPELSVPLSRTETRYQCQTCPTVYTDLADFNAHRQICLQEQRTDLLGQTEVQNNKIFADTSDISSVDSDDENKDFRNAEAKLAKNPQLTILKQALTKGDSLKRNFDDDGSTSSNKPKKIVKSEEGENSQKRWYCEACPQSFTSVDSLKEHEIRHDAEKPFLCILCKKDFVLKSSLIRHITMSHGVDPTPFVESDKCLKTTVMPQNWDDRVDVSVYDQSEVKDPLELSSPEINLENDDKDYKNSHENIEIETVFVCETCKRDFNDRASLWLHIRAMHKEYAAFTCGVCLKMCFNNTQLQSHVYKYHGRSKLLISEQRRYSCIICGRQHDSRKKLITHVSIHNIDSAYDPATYVQLNSNYYNENLNGNEGNEQVLDFDGEAGEKVDCYICCKSFPTEDHLIRHQRNAHKSDQMASLGDAAGSGNALNVNGNGNRTQYHLFFVCEVCGSSHSSKWERWLHINNTHNNESSIKCEWENCGKIFATKSLRNEHLQHHAVQGPSPNTCEICGKLWPTRVDYWKHVMGVHADTVPLICGVCLKVFSDVMQLSAHVKAKHWPLTSGDFCCDICGRPYSNKSKMSRHRKIHGLEAAMDAACDNSSFNETTNESVKPDYSNGASEIELSCEQCPELSFTTLDSLCNHRRIAHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHADVTCPYCAKTSASRDHLAAHIAKIHRFMPAMGKDNQNCIISKSLSVEDGVLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVNHMDHPDLTCDHPSCKKLFRTKEDLESHRKDHKYHSSPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVETEHSSVLSNPNTCQVCGKQYASKWKAFDHTKKCHGKVFLTCKQCLAVFTDENDIRDHYEHAHNVPKDQLAIFEYRIDIGAKREGCETPDQYIIVKQEPDDLEFDEEMCDESSNDSRKRIRSPNDTYDCEMCPEIFLNSDTLAKHYQNVHNTDPVRMFKKFKKDNSDSKRKIKNKDNFECKNCKKQFSTRNLLWNHINICTQRNSIGRFDVPNNVPTSILESHLKNNNQIQREEPVPLTNESNLNIPDFNLFEDINLQLSAQKPVPNLMPLSQIKTSGNGKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCTSYEDLADHLKAEHAPVLSPEGNNFTCKTCGRYHNARSKLLLHMSIHIGNFRCQNCQQGFASEEKLTEHTTSCNGKLEFEDHAVADEDNAKNDNDEKGSLIADETSVIEETEEADFESEGERSRDIHDEDNSENSEEDNSENSDDSDSDSNSSSSEEENENEEGEEEEEEEENENESDTRTTSRASGDSVSCNSESDDESDMNEAEVSATEKNALQLSDISRFRIHGIQETMSMEVNVKDEKPDLTSITVATIAEQTTQCNLNDLLISNVPANMDKFEAFHLEESAKATTSDVDFSDDNEDNGEDDNEEDDENEEAEEDGEEGGEDEGEDEEEGEAETEAESENEDEGEAAAEEEEEDDEEEENDEDDDDGPPVLSPIMPLLPENESEEHSGTTDRTRHKLSPMVPLSITKIEQCEIKTERSNDAENVSNAANFFAANNNDLPVTWDDNLDDNGVDNGDCNFEDRDVVKSEEFREYKMEVNEGDDFVEDSAYENVVDNNGEGDEDNQVHEVHNLDGTVLMVTNDAEGNQILIEQNVLDIDNEDSNAEAAQYIYPENVYEIEEEDYVARNETDVMQTNEMQGSMSYVQVTSENEDSTEGDIEENSSDVQKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01355612;
90% Identity
iTF_00126157;
80% Identity
-