Amia012244.1
Basic Information
- Insect
- Aphaenogaster miamiana
- Gene Symbol
- -
- Assembly
- GCA_003063725.1
- Location
- NJRN01000026.1:867992-869192[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3e-07 0.00025 21.2 0.0 5 39 1 35 1 39 0.93 2 2 1.9 1.6e+03 -0.6 0.1 7 15 161 170 161 173 0.85
Sequence Information
- Coding Sequence
- ATGAAGGAGGCTATAAGAAAATACAAAACAGGCAGATATGGCCTAAATGAGATATGCAGATTATATGAAATCCCAAAATCAACATTTAAACGACATTTAAATTCAACAAATGTTAGAGCCAATCAAGGCTCTAAAGCTTTGGttaaaaaaaaaaatcaaaaaatttttgcgcAAAGAGGAAAGAACCAAGTAGGAACAGTAGCAAGTGGGGAAAGGGGTGTAAATACATCCATGGTTGTTTGCTGCAGTGCTGCAGGTCAATATGTAGCAccaatgattatttttaaaagaacaaGGATGATGACAGAGCTGGGCATTGGAGCACCACCGGGATGCTTAGTAGAAATATCTGACAGTGGTTATATTAACTCTGACTTGTTTGTTAAATGGTTACAGCAGTTTATTAATGCAGTTAAagcaacaaaagaaaataaagttttattaattctggATGGTCACACCActcattcaaaaaattttgctgCTGTGGAAATGGTTCGTGATAACGGCGTCATTATGTTGCAACTACCTGGTCATACTACACACCGGCTTCAGCCACTCGATGTTGCTGTCTTCAAACCTTTAGAAACCTATTACAATCAAGCTGTCGAAAGGTGGATGAGAGTACATCCAGGATTGGCAGTAACTCAGTTTCAGGTTGCGGAACTTCTTGGAGAAGCCTATGGAAAGGCAGCATCCATATCAAATTCCGTAAATGGATTTCGCAAATGTGGAATATGGCCAGTGAATAGGCATGTTTTTTCTGATGTTGATTTTGCTGCTTCTGATGCCCTGCATAATAAAGAAAACCTAGACCCTATAGATGCTTAA
- Protein Sequence
- MKEAIRKYKTGRYGLNEICRLYEIPKSTFKRHLNSTNVRANQGSKALVKKKNQKIFAQRGKNQVGTVASGERGVNTSMVVCCSAAGQYVAPMIIFKRTRMMTELGIGAPPGCLVEISDSGYINSDLFVKWLQQFINAVKATKENKVLLILDGHTTHSKNFAAVEMVRDNGVIMLQLPGHTTHRLQPLDVAVFKPLETYYNQAVERWMRVHPGLAVTQFQVAELLGEAYGKAASISNSVNGFRKCGIWPVNRHVFSDVDFAASDALHNKENLDPIDA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -