Amia006886.1
Basic Information
- Insect
- Aphaenogaster miamiana
- Gene Symbol
- -
- Assembly
- GCA_003063725.1
- Location
- NJRN01000318.1:192135-194082[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.1e-10 2.5e-07 30.7 0.0 2 39 22 59 21 63 0.94
Sequence Information
- Coding Sequence
- ATGCCACCGTTGCCACGGAAAGTTATAGGCTCAACACCGCCAAGAAAAAGGCAGGCTTGGGATAAGGATAAGATGCAAGAGGCTGTTACTTTAgtcagagaaaaaaagataggGCTAAAGAATGCAGCTAAAAGATTTACAGTTCCGAAAACAACATTGCAAAGACTGGTTCGAGAAACACAATTGTCACCCGAAAACGTTATTATGAAGAAGCTAGGAAGAAAGCCAATACTCCCTGAAAATCTAGAAAAGGAACTTATGGAATATTTACTTATGATGGAATCAAAATATTATGGTTTTACTCGCATGGATATTCGTAGAATGGCCTACCAATTAGCGATAAGAAACAATGTTCAGAACAATTTCAGAGATGAATGTGCAGGGAGAGCGTGGCTTGATCATTTTCTTCGTCGCTACAAAAGCAAGCTTTCTCTTAGGAGACCAACTGGAACCTCTTATGCACGAAGTAAAGGCTTCACTCGCGAAAGAGTAGGAGATTTTTACGACTTGTTACAGGTAGAGTACGAGAAACATAACTACCCACCTGACAGCGTGTGGAACGTTGATGAGACGGGTATAAGCGTAGTTCAGACAAAAATTCCTGAGGTAATAGCATCTAAAGGAAAATGTCAGGTATGTTCATTAACCGCTGCAGAGCGTGGATCTCTTGTTACAGTTATTTGTTCAATGAGTGCGGGAGGCTCATTTGTTCCGCCAATGCTTATATTCCCACGAGTTAAAATGATAGACACGCTAATGAGAGGGGCACCCCCTGGCTCGATAGGGAGGGCTCATCCATCGGGATGGGTACAGAGTCATCTTTTCACGGAGTggtttgaacattttattgcGAAGACTAAGCCAACAGAAAATTCACCTATTCTGTTGATCCTGGACGGACATTTTTCCCATACGAGAAATCTCGATGTCATAGATTTAGCGagaaaaaattatgtttctattatttcattGCCATTCCATACAACACATAAATTACAACCTTTAGATCGCACTTTTATGAGCCCTCTGAAAGTCCACTACAGTGAAAACATAAGACAATGGATGCTTCATCAAAATAAGCCCGTTAGACCGTACGATATTGCAGATCTTTTTGGTAAAGCCTATCTGCGCTGCGCATCTGCAAGCAACGCTGTTAATGGATTCAAGGTCACTGGAATCTGTCCATTTGATCGGAATGTCTTCAGTGATGCAGATTTTATCGCTGATTCTGTAATAACTGATCAATTTACACACATACTGGCTCCTAAACATCCTGATCCTATTGCCTCTACATCTACTTCTAATACACCAACCTCAAGACCTGGTATTGACTTATGTCAAAAATCTTATTCCGTATTACCAAGAGACATTCATCCCGTTccagagaagaaaaagaaaacatccaCGAGGGGACGAAAAGCAAACGTCTCAAGTCTTGTTACTGGATCGCCATATAAAGAGAAGTCGAAGTCATATATCCATGAGAAGAAGGAAATAGCTCGAGGTCGTGGACGAGGTCGTGGACGAGGTCGTGGACGAGGTCGTGCATCATTAAACGCTCTCGTAAAAAGCCATTGTGAAGAAAATCTTCCTTCTACTTCTGGGCTTAGTCGTGGTcgtggaagaggaagaggacgcCTGAAACTTACAAAAAAGAGACCTGAACGTGATGAGACTGATGAAGATACACTCTCTTCTTGCGATTCGATTAAACTTCCGGTCGATGAGCCGCTGCCTGACCAAAAAGACGCTTTCTGCTTGTTCTGTGAAGAGAAATTTTCGGATGATGTTAAGGGTGAACTGTGGGTTCAATGCCTCATGTGCAGTCTTTGGGCTCACAATAAGTGTGCAGGGGCAGAGAAAGCAGAATATGTTTGCGACtattgccgataa
- Protein Sequence
- MPPLPRKVIGSTPPRKRQAWDKDKMQEAVTLVREKKIGLKNAAKRFTVPKTTLQRLVRETQLSPENVIMKKLGRKPILPENLEKELMEYLLMMESKYYGFTRMDIRRMAYQLAIRNNVQNNFRDECAGRAWLDHFLRRYKSKLSLRRPTGTSYARSKGFTRERVGDFYDLLQVEYEKHNYPPDSVWNVDETGISVVQTKIPEVIASKGKCQVCSLTAAERGSLVTVICSMSAGGSFVPPMLIFPRVKMIDTLMRGAPPGSIGRAHPSGWVQSHLFTEWFEHFIAKTKPTENSPILLILDGHFSHTRNLDVIDLARKNYVSIISLPFHTTHKLQPLDRTFMSPLKVHYSENIRQWMLHQNKPVRPYDIADLFGKAYLRCASASNAVNGFKVTGICPFDRNVFSDADFIADSVITDQFTHILAPKHPDPIASTSTSNTPTSRPGIDLCQKSYSVLPRDIHPVPEKKKKTSTRGRKANVSSLVTGSPYKEKSKSYIHEKKEIARGRGRGRGRGRGRGRASLNALVKSHCEENLPSTSGLSRGRGRGRGRLKLTKKRPERDETDEDTLSSCDSIKLPVDEPLPDQKDAFCLFCEEKFSDDVKGELWVQCLMCSLWAHNKCAGAEKAEYVCDYCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00129662;
- 90% Identity
- iTF_00127374;
- 80% Identity
- -