Amia008064.1
Basic Information
- Insect
- Aphaenogaster miamiana
- Gene Symbol
- -
- Assembly
- GCA_003063725.1
- Location
- NJRN01001913.1:17740-18249[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6 5e+03 -2.2 0.0 31 39 19 27 18 29 0.81 2 2 2.5e-13 2.1e-10 40.6 0.0 2 38 67 102 66 108 0.91
Sequence Information
- Coding Sequence
- ATGCCAGCCAAAGCTAAGAAGAAAGAGGATGCtacaaaaaataagaagaagaaagaaacatTGAGTAGTGTTGTGAAAAGAAGTGACAAAAGTGAGGTGAAGAGTACAGTTAAAAGTAAAGTAGTGGTCAAGAAAGTAGAAAAGAgcaagaagaaggaaaaaggatggaagaagaaggagaaaagAAAACAGTACTCTCATGAATCACTAGAGAAGGCTCTGCAAGCAGTTAACAAGGGCATGTCATACAGGAAAGCTGCAGAAAAGTTTGGCGTACCGCCAACTTCTCTTCATAGGACTGTGAAAAATCctcataaattaaaatcaaaaagtGGTCCCTCTACAGTTCTACCTGCAAATTTAGAACAGAATATTATTAACTGGATCTTGTATCGAGCAGAAAGAGGAAACCCAGCTACGAAAACTGAGTTGTTAGATTCTGTGCAAAGTTATATACAACTAGAAGGGACAAAAACTCCCTTTATTAATGATAGGCCAGGACGACACTGA
- Protein Sequence
- MPAKAKKKEDATKNKKKKETLSSVVKRSDKSEVKSTVKSKVVVKKVEKSKKKEKGWKKKEKRKQYSHESLEKALQAVNKGMSYRKAAEKFGVPPTSLHRTVKNPHKLKSKSGPSTVLPANLEQNIINWILYRAERGNPATKTELLDSVQSYIQLEGTKTPFINDRPGRH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -