Amia019236.1
Basic Information
- Insect
- Aphaenogaster miamiana
- Gene Symbol
- lov
- Assembly
- GCA_003063725.1
- Location
- NJRN01000121.1:466873-470983[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.5e-15 7.1e-12 45.3 0.0 1 44 538 581 538 582 0.95
Sequence Information
- Coding Sequence
- ATGTCGAGCGTCGGGAACAGTCCTGACAGAATGGCTCTGCAATCGCACCACTATTCCCTACGATGGCACAACCATCTCGCCCACATACAACGGGCGTTCGAGGAGCTGTTGCACGCGGAGACGCTCGTCGACGTGACCCTCATCTGCGCCGACAGCAGCGTCAAGGCACACAAAGTCGTTCTCAGCGCCTGCAGTCCCTTCTTCGAGAGGATATTCGCGGAGAATCCGTGCAAGCACCCCGTGATCGTGCTGAAGGACTTCTCGCATCATGAGTTGTCCACTCTGGTACACTTCATATATCGCGGCGAGGTGCAGATCGCCCAGGAGGAGTTACCGGGGCTGATGAAGGCCGCGGAGTGTCTGCAGGTGCGTGGGCTGTCGTCATCGGAGCCTAGGCCGGTATCGACGGAACCCAGACCATCGTCATTGGCGTCAACGCCGACGCGCGATATCATTCTGGCCGAGTTACCAACGCCGGAGGTCGCGCGACACGGAACACCCGAGGAGGACGAAAACGCATTGGAGAGCATGAGGGAGATGAAATCCATCCTGTTTCCACCAACGAGGGACCATCCGGCCAAGCCGCTCATTGGCCACGTGAACTTTGGTATTCGCGAGAGTTGCGGCTCGCCGTCCATGCCACGGCGGAAACAGGCGCGTCCGCGCCGACGATCCGGCGAATTGTTGCCGCAAGATCTGAGCAGACGCTCGACCCCGCCGGTCAGCTCGAGTCCGCTGCCAAGCATTCTTAATCTCAGCGGTGGTCAGCATCAGGCGCAGCAACAGCATCAGCAGCAGCTATTGCTGCAGCAATCCCACTATCAACAACAATCGATTAACAACGCACAGAACCAACAGCAGCAACAGGAAGACATGGCTGAGAATCTCTCGATGAAGAAACCGATATCGCCAGGCGGACTAGACCAGCACCACGTGAAGACGGAGGGTAGCGAAGCGACGAGCAGTCCTCGCGGCTCGCCGCTCACAGGAACGAGTCTGCTACATCATCCGGATGGTCCTGTATCGGACATCCCGGCGACCGTAGCGGCGGCCGTAGCGGCGACTGTAGCATTGTCGCTACCAACAATGCCAACGTTGTCACTAACGCAACCGCATCCTCCCGAGTACCTGACAAGTCTCGGCCAGCTAACGAGCCAATGGCTGCCCGGACATCCGCAGAGTcaactgccgccgccgccgcctcaaAGCCATCACCCACGCGAGAACAGTCCGCACGGCTCTGGTAGATCTCATCCGtatcagcaacagcagcaacaggaATCGGCGCTGCCACGACGTAGCGCTATGGCGATGTTCACGCCGACGTTGGACGGCGTGACGGCTCTAGGCGGCGGTCTTTTCTCTCATGCCACGTATGACAGAAACAGTCTCCTCGCAGATTCGCTTCTCGCGGATAATTTCAAGCCAGAGGCATTGCAAAATCTCTTTAGTACCTCCAGCCTTGGTCCTCCGCCCACCAAAAAGGCGAAAAAACATCGTAGTGATGGTGACGCACCACGTAGATGGACCGATCACAACACTCGAGCACTCGCGGTTAATAGGCCCAAGGGGCAACACAGCGCTCCGCGAGGAGGACCACCAAGGTCATGGACGAATAACGAGCTTACGATGGCTTTGCAACATGTCTGGGAAAAAAAACTAACCACGTCGCAGGCTTCTCGTATGTTTGGTATTCCCTACAATAGTTTGCTGATGTATGTGCGTGGTAAATACGGAAAGAGTCTAAAGCTTGAGCAGTTACGTAGGGACTGTACCGGCGCCAATACCCCTGAGATTATGAACAACAATAACATCAAGCCCGTCCAGCAGTCCGCGCAGATGAGCCACGGGCTCACCGGTCTGCCATTACAGCATCCGGGGGACAACGGCGGCTACCCCCATCGCGGTCTACTCGGCGGCAACATGCCGCAGCCGCAGGGCTTCTATCCCGCCGATTATGCCACCGCGTCTTTCCCTCTGGCAGTGAATATGGTGCATATGTTACCCCCGAGCGAGCAGAAGACCTTCGAATCGTCCGCGAACCCGGGCGGCGACGTAGGCGGGAGTGGGTGCGTAGGAAGTGGGGGAGGGGACGGGAGCGGCAATAGTGGCGGTGGTGGCGACCTGATGAACTCGCAGACCAGCGAGACACCATCCCCCATCGTcgaccaccaccatcaccaggAGTCGTCGATGCAGTCGCAACCAACGCAATCGGTGCCCGCGTTGCTGCAGCAGAACGGTTCCGATTAG
- Protein Sequence
- MSSVGNSPDRMALQSHHYSLRWHNHLAHIQRAFEELLHAETLVDVTLICADSSVKAHKVVLSACSPFFERIFAENPCKHPVIVLKDFSHHELSTLVHFIYRGEVQIAQEELPGLMKAAECLQVRGLSSSEPRPVSTEPRPSSLASTPTRDIILAELPTPEVARHGTPEEDENALESMREMKSILFPPTRDHPAKPLIGHVNFGIRESCGSPSMPRRKQARPRRRSGELLPQDLSRRSTPPVSSSPLPSILNLSGGQHQAQQQHQQQLLLQQSHYQQQSINNAQNQQQQQEDMAENLSMKKPISPGGLDQHHVKTEGSEATSSPRGSPLTGTSLLHHPDGPVSDIPATVAAAVAATVALSLPTMPTLSLTQPHPPEYLTSLGQLTSQWLPGHPQSQLPPPPPQSHHPRENSPHGSGRSHPYQQQQQQESALPRRSAMAMFTPTLDGVTALGGGLFSHATYDRNSLLADSLLADNFKPEALQNLFSTSSLGPPPTKKAKKHRSDGDAPRRWTDHNTRALAVNRPKGQHSAPRGGPPRSWTNNELTMALQHVWEKKLTTSQASRMFGIPYNSLLMYVRGKYGKSLKLEQLRRDCTGANTPEIMNNNNIKPVQQSAQMSHGLTGLPLQHPGDNGGYPHRGLLGGNMPQPQGFYPADYATASFPLAVNMVHMLPPSEQKTFESSANPGGDVGGSGCVGSGGGDGSGNSGGGGDLMNSQTSETPSPIVDHHHHQESSMQSQPTQSVPALLQQNGSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01477024;
- 90% Identity
- iTF_00765461;
- 80% Identity
- iTF_00128348;