Amia009634.1
Basic Information
- Insect
- Aphaenogaster miamiana
- Gene Symbol
- bab2
- Assembly
- GCA_003063725.1
- Location
- NJRN01000126.1:389261-391539[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.3e-17 6.1e-14 51.9 0.1 1 45 360 404 360 404 0.97
Sequence Information
- Coding Sequence
- ATGAGTACGCCTCAGCACTACTGCCTCCGATGGAACAATCATCGCTCGAACCTGCTGAACGTCTTCGAAGAGCTGCTGTACAACGGGGCGTTCACCGACGTCACCCTCGCTGTCGACAGCGGTCTAACGGTCAAATGCCATAAGATCGTGCTGGCCGCATGCTCGATGTACTTTCAGACTCTCTTCCACGATCTGCCGAATCAACAGCATCCAATAGTCGTTCTCAAGGATGTTAAGTTTTCGGAGATAAAGGCGCTACTGGAGTATATGTATCGCGGCGAGGTGAACGTCGCGCAGGATCAGCTGGCCGGTCTGCTGAAGGTCGCGCAGGTGCTGAAGGTGAAGGGTCTCGCGGAGGGATATGACAGTCGGAGCGGCGTAGCGCGCGACCTTCGCCGCGAGGACACGATGGACACGTCGATGTCGCCGCCGCCGGCCATCAGCACCAGCACCGGCGGTGGCAGCGGCAGCCACTCGTCACCGCCGCACTCCACCGGCGGCTACCTCTCCTATTACGGAAAATCCGCGGTCTCGCACGACCGCGGTCAAAGTCACCACCCGAATCCGTTGTCGCTATGGTCCCTGCCACAGTTGCATTCCGGAGCGGGTCATCAGCTTCCGACGTCGCTCTCGTCCTCTGccctcggcggcggcggcggtggcggcggcggtggcggtgggtCCTACGATAACGGTATCGAGACCTCGCCGCTCAAACGTCGGAAACTGCTGCACCCGCAGCCGTCGACCCTGCTGATGAACAACGACACGCCGATACTGCGCACGGTACTCGGCCAGTCTCACGTTGATAGTTCGCAGGCTATGCCGCTGCTGCAGCCGGACAGCCACGAGTCGGTGCACTATCGCACCGCGAGCAGCAACGGATCCGCGAACGATAACGACAACCGCCGCGGCAACGACCTGACCCACAGCGAGACAGTCCACCCTGACGTCACCTACATGGACGAGGACGAAAGACAGCCGTCCCCGCAGTCATACGTTGGGGATACCGTGAAAAATTCAGCTGTCGCGGACTGCGTCCAGCCGAAACCCGAGTGGAAGCGTTATAAACAGTACACCCGGGATGACATCACCGCGGCGATCGAGGCAGTGAGGAAGGGTATGAGCGCCGTTCAGGCAGCGCGAAAATATGGTGTGCCATCGCGCACGCTTTACGACAAGGTGAAGAAGCTCGGCATCCAAACTTCGCGGCCGCTCAAGCGCCCGTCGAGCAACGGAGGAAGCGGGGCCTGCTTCCCTTACGGCATCGGTGCCAACGTGAACGGCGCCGTTTACGACGGCAGTGCCAACGCCCTGTCCGAGAACGAGAACGAGGGCGGCGGCGTCAACATCGTCGAGGGTTTGGCCGGCACGAGTGCCGCGGCTTTCGACGCCGCGTACGCCAAGGCGACGAAGGACACGTCGCAGGACCGCGACTCAGTAGCAGACTCGATGGCCCGTTGCAGCTCCAGTCCGGTGATACGCTGCGCTAAGCAGAAACAGCAGCAGCAGGACCTGAACGATCAGGTGGAGGATCTATCGGTGAGTCGCAAGTCCGATGTCCCGGTGATAGTACCGCCGTCCACTACGTCGGTCGCGATTAAAGACGAGGCGCAGGAAACGGGTCTGGATAGCAGCGACTGCTGCGACTACAGCTAA
- Protein Sequence
- MSTPQHYCLRWNNHRSNLLNVFEELLYNGAFTDVTLAVDSGLTVKCHKIVLAACSMYFQTLFHDLPNQQHPIVVLKDVKFSEIKALLEYMYRGEVNVAQDQLAGLLKVAQVLKVKGLAEGYDSRSGVARDLRREDTMDTSMSPPPAISTSTGGGSGSHSSPPHSTGGYLSYYGKSAVSHDRGQSHHPNPLSLWSLPQLHSGAGHQLPTSLSSSALGGGGGGGGGGGGSYDNGIETSPLKRRKLLHPQPSTLLMNNDTPILRTVLGQSHVDSSQAMPLLQPDSHESVHYRTASSNGSANDNDNRRGNDLTHSETVHPDVTYMDEDERQPSPQSYVGDTVKNSAVADCVQPKPEWKRYKQYTRDDITAAIEAVRKGMSAVQAARKYGVPSRTLYDKVKKLGIQTSRPLKRPSSNGGSGACFPYGIGANVNGAVYDGSANALSENENEGGGVNIVEGLAGTSAAAFDAAYAKATKDTSQDRDSVADSMARCSSSPVIRCAKQKQQQQDLNDQVEDLSVSRKSDVPVIVPPSTTSVAIKDEAQETGLDSSDCCDYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00126087;
- 90% Identity
- iTF_00126087;
- 80% Identity
- iTF_00128340;