Amia002249.1
Basic Information
- Insect
- Aphaenogaster miamiana
- Gene Symbol
- JARID2
- Assembly
- GCA_003063725.1
- Location
- NJRN01003692.1:1424-8841[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3 1.1e+04 -2.6 0.1 56 83 150 179 139 180 0.63 2 2 9.1e-23 3.3e-19 69.5 0.0 7 89 1358 1438 1353 1438 0.93
Sequence Information
- Coding Sequence
- ATGGTTTTGAGTCGCAAcgacaagagaaagagaaaggagggaGACCTGGTGGATCTTATGGAGCCACTCTCGGAATCTCCGAAAAGGACCAAAGTTCACGCACAAAGAAAGTTTGCGCAGGGTGCAACCACAGTGTTTAATACATCACCTACACCTGTGAAGgacaaagaaaaagttaaacCTGCCACAATCACAGAATTAATAACTCACAAACGTCCAAACACGGAGgactttttaacatttttatgctTTAGaggAACATCTATTTTACCACCTAGTttaaatttcttcaatattGGCAATAAAAAGGAGAAACAAGGACTTAAGCCAGCTCGAATTTCTACAGAGAAGACATTGTCTTCTACCAGTACTTCTACAGAGATTCAGAAGCAAGAAAATACATGCCCAAAAAATGTGACAAAAGTAAAGCCTATTGTTTCGAATAAGAAGAAGGTCGCTAGTACATTACACGAAAGCATTACCAAGTTAAAGACAGCTACGTCTACGGTACAAGCGCTTAAAAAGAAATACCAGGAGCAACGGCTTGCTAAGCAAAgaatcaaaaataaattcaaaaccACTTGCGTTATGAGGACAAGATCATGTACAGAGAGATCTATGTTGAAGGCTAGTCTTCAATTGGCGCCGCGAAAATTTGTACCTAGAATCAAGACTAAGAGACATGGCCTAAGAAGTGGTGTACTGCCAGATAAAACCAACAAATCTCTATCAAAAACGAAAGTCGCGTTACCCAAACCAAAGAAGAAAGTCAATCTAAAACAGAAAAGTAGCGATACGTCGAATACAGATGTATCATCCGAAGAGAATAATGATGCCGAGGATGATGAAGAGGAAGAGTTACATGTAGAAAAATCGACATCGCAGATAAAGCGCAACATACAAAGAGGTATCCAAAAAAAGATTTGTACCAGAAGTAAGTCAGAGATGAGGAGAGTTACGAGATCGTCCAGTGGTACAGTTTCCTCACAAAATCTCTCCAGGAGGCCTACCAGAAAAACGAAAGAAGCAGCTGCTGTATATATGGAAATTCTTGGGAGAAAATTAGTGAGCCCGGATTTTGAAAATGATAACATTTCGGTTGAGAGCTTTCCTGAACTGCCAAATGCTCGTAGAATAGCACAAACAGAGAACGAGCTTAAAGCCAAAGTGAAACAGACTAATATTAAGACTATTGCTAAAACTAAGGATTCTAAAGTTAACTCCTTTAATAGTAATGCTAATAAGCGATTGGATAAAAGCAAAAGCAATAAGCTGATTCTAAAAAGCAAACGTCTGATGAGGATGCAGAGATATTGTGAAGAGGATAGCGACGAGGAATCGGAGAGCTCGATAGAAACAAACAATACAAGACCTATTACCAGACAGAGTCTTGGAAAAATTGATAAACCAGTTAGCAGGAGCCTTAGATCATCTTCCAAATACACAACTGTACAAACAGAAGTACAAAGTAACACAAATAGCAAATCGAAGATCCAAGTTCAAAGTTCTGTAAAATCAGCTAGGGAAAAATTCGTGATAAAACGTAAACGCGAGCAAAATGTATCTAAAACATCGTCAGATAAAATTAAGCCGAAAAACCTTAAAAGTAATCAAAACGAGAAAGCGGAATCCGAAGAGGAAACGTTGGGAATGTTGCTcagtaaaataaagaagaaaaaagaatatgacgaggaggaagaggaagggcAGATCTCTAACAATGTTAACAATAGAAAAGATGTAACGGCAGTTTGCAGCAAtgctaaaaatatgaaaacggATTTGTCGAAAGTATCGGATGATGAGGAATCTTTTCGTGGGTTTTCTAAGAAGGCGATATCGAAAGTTTTGAATTCATGTCAAACGCATGCCAATGTTAATTTGCTAGTCACAGAgtccaataaaaaattgaattcgcCTAAAATATTGAATGTATCGCAAACAGCAGATCAAAGCGCCATTTTACAAAAAAGTAAAGTAGAGACATCACCGGTCAAAACCGGTTCCTCGGTTGGATATTCGCTAAACGACGAGTGTAATGTATCTGTGCAGGATCAAAAATCAGTATTGGATTTGTCTGTTAAGATGCAAAGCTCGTTATTGCCATTCGTGGAACAGACGAGCAAAAAATGTAATCACGAAAACGAGGTTTCTTCCAATCTTATGCCACTGTCTACTCTACATACGAGAAAAGAACGAGTGAATATGTCAACCGAACAGATAGAAAAATGGTTAAATGAAAGCTCGCTCGCCAAAGAAGAGAGCAAGATAGAGATGGAAAACGTTTCCAGCTTTAGATATGATTCTGCAGAAAAATTAAAGGCTGATGTCTCGCATCTGTCTATTTCGACGAAAATCCAACATTTAGTACGTCCGGTTAATGTCACACTTTCGAAATTATCAGATAAGATGAATTCGAAGGATCGTGTGGGGATACATAGCAGAAATATACCGGTAGCATCTGATATGCATAATACTGGAGTGAAGCAACAGAATGCaattattgacaaaaataagaTCATTACCGAGGCAAAAGAgattgtcaaaaataaaactgaaaaaacaAACAAAGATACTTCTCTCGCTGAAGATACTAGCGATACTGTGTCCAAATCGGATCAAAACTCGGTAGATGGTTCTATAGAGAAGAAATCACCAACagagaagaaaatatttcaacCGCGAAAACCCTTTCTACCTAAGGTCAGAGAACGTAAAACTACAACACCGAATGCGAACGCGTTTTCGCCAGAGAACGAGAGCAGCGTTTACGCATTTGAAAGTGACACTGAGGTTCCCGTTAGCACACCCTTCCGGAGGAAGATCAGAGACAATGCGAAACGCTCGACCGCAATAATGCCTACAGCGGCTACAGTGTCCAAGACCAAAGTGATTGCTGAAGTCAACAAATCGAGTTTAAAGAAGGACTCTGAACCGCCGGACAGCAAGGAAAAATCGTCGGACGATCTTGCAACGTCCGTAAAGAAAGAACAAGAAACGCAGGGATCAATGAATGTAGCGAATACGGCTCCAAGCGTGAATAAGTTTGAGTTGCCTAAGAATTTTGCGAGTTTGACTAGTGTCCAAGTGCTACCACTCGACAAACTCACAACAAGTTGGAGCAACGTAAATTGCAGCGCTTCTATAGCGGTGCAGGTGAATCTCGATGAAACCACGCAGGAACAAGAAAGCGATGCGAATCAACAGAAAAGTACCGAGATATCCACTCAGACCGAAACAAGTAACGAGAACGATGATGATAATGACGGACAGTTGTTTTACATTCCGTTACAGGCTGTTACTAGGAGTGGACCAAATTTGGTGCAAGGTCAACAGCTAATACAAGGTGTGGCTGTTAAACTCGGCACGGAAGGACCGACTGGCCCTAATCAAAGGGTGCTCCTTCGAGCTAAGTTGGTCACCAAGCCACCGTTATCCGTGGCACACCGATGTCCACCGATAGGAACGGTGCAACCGACAACGCGTACCCCGCCCAATCCTACGGCAATAACAGTGGAACAACAAGTACCATTGACGTCAACAACTGCAACTGTATCGACTACGATAGCAAACATGCCAAATGCGGAGATACAACCGACGTTACTAGCGAAAAGTGAAGTCTCGGTGCCAAGTCTGAATCGTCAAAATGTCAGTACGAACGCGAATAGTAGTTTAGAGAAACTTACAAAGTCACCGAAGTCATCTAGGGAAAGAAAAGCTTCTATAGATTCAACAAAAAGCGGCAAGAGgACACAAATGAAATGCAAACAAAAAGGATCAGAACTATGCTCTTCAAGCAATAGTATGACGTTTCCAGGCACAAAAATTGCGAACGATGAAGCTCGCGTGGTCGAGGCGCCAACGTTTTATCCGACGGAAAAAGATTTCCAGGATCCATTGGAGTATATAGACAAAATAAGGCCGATCGCTGAAAAGTTTGGGATATGTAGAGTTGTACCTCCACCAAATTTCAAGccaGAATGCAAGGTATCTGATGATATGAGATTTACCGCTTATAATCAATATGTACATCGCATGCTTCATAGGTGGGGTCctaatgtaaaagaaataatggctatcaagaaatatttagcTACTCAGAGTATTACTTTGACCCAACCTCCATGGaTTGGTGGAATGGAGGTAGATTTACCTCACTTATACCAAACAGTTCAAAGCTTAGGTGGATTGAAAGAagttattgaaaaaaagaaatggcaGAAAGTAGCAGATGGCATGAAGATACCGAAATCAGCACAGGATCGTGTTACTAAACTAGatgatatttattgtaaatatttactgCCATATGATACATTATCTCcagagGAACGTGGGAAATTGTTTGATGAGGTTGAAACTGAATGGATGAAAAAGGAAAGCAAAGCCTTACAAAGACAAGAAGTGTCACCCAATGATAATGAGGAAGAAGAGGACGAGGATAGTTCTGATGAAATTGAAGAATGCATTGTGAAAgGAAGAAATATGCCGTTGAACGCTTTTTACCGAATTGCCCGTAATACGCAACGTATGTGGTTCGGCGAAAATCAACGAGGAAATGAAGCCGAGGGTGCTCTCGCCGACGAGGTAGAAAATGCATTTTGGAAACACGTTGCCGAGAGAAAACGTCACGTCTGCGTACATGCGGCAAGCATCGATTCGAGTGGTCGTGGATTTGGTTTTTCCGTTGCAAAAAACAGCCCATTTGCTAGACATCCTTGGAATCTTAAAGTTCTCACTAACAACGCTGGATCAGTATTGAGAGCTTTGGGACCAATAATGGgtgtGACCGTACCAACATTGCACGTGGGTATGTTATTTAGCGCTTGTTGCTGGTATCGTGATCCGCATGGTCTACCATGGATAGAATATTTACATACAGGTGCTAAAAAGATTTGGTATGGGATACCCGATGAGCATAATAACAATTTCCGAGAAGCGCTCTCGAAAATGGTACCacgatattgcaaaaataagacTATATGGTTACCTTCTGACACTGCCATGGTTCCACCAGAATTATTAGTGAGCAATGGTGTGCCATTATGTCAAATCGTGCAAGAACCAGGGCAATTTATAATAGTATTTCCAAAAGCATTCACATCGAGCATATGCACTGGTTACGTAGTGTCCGAGAGCGTATATTTCGCACAACCATCCTGGTTAGAAACCGCGGAGCAAGTATTTAAGGACATACAAGATAGTTGCGAACCTTCTATCTTTTCATTcgaaagattattatttaatattattaatgatacgAGATCTCacatagatatattaaaacagATATTGCCGAGTGTGATAAAGATTCGTgaaaaggaattaaattatCGTAAACAACTGGAAAGCGTAGGTCTTACCAATAGAGAAAGATTGCCTTTGCCAGATAgtggaaaaggaaagaaaggaaaaaaggtgAAAGAAGATGATGGCGACTTTGAATGTGAGACGTGCAGAGCCAATTTGTTTGTCTCTTTGATAAACAATTCGCAAGATGATAGCGTATATTGTTTGCCGCATGCATTGCATTTAATCAGTCGTAAGAAGCAGGTTTTAAGACATTGTACTCTGATGTACACATATGACGAAGACGAATTAGATGAATTGATTCACAAACTGGAAAACAGGATTGAAGCCAAATCTAAAAAAACTaatcaaataaaacaaaataagcaAGAAAGATAa
- Protein Sequence
- MVLSRNDKRKRKEGDLVDLMEPLSESPKRTKVHAQRKFAQGATTVFNTSPTPVKDKEKVKPATITELITHKRPNTEDFLTFLCFRGTSILPPSLNFFNIGNKKEKQGLKPARISTEKTLSSTSTSTEIQKQENTCPKNVTKVKPIVSNKKKVASTLHESITKLKTATSTVQALKKKYQEQRLAKQRIKNKFKTTCVMRTRSCTERSMLKASLQLAPRKFVPRIKTKRHGLRSGVLPDKTNKSLSKTKVALPKPKKKVNLKQKSSDTSNTDVSSEENNDAEDDEEEELHVEKSTSQIKRNIQRGIQKKICTRSKSEMRRVTRSSSGTVSSQNLSRRPTRKTKEAAAVYMEILGRKLVSPDFENDNISVESFPELPNARRIAQTENELKAKVKQTNIKTIAKTKDSKVNSFNSNANKRLDKSKSNKLILKSKRLMRMQRYCEEDSDEESESSIETNNTRPITRQSLGKIDKPVSRSLRSSSKYTTVQTEVQSNTNSKSKIQVQSSVKSAREKFVIKRKREQNVSKTSSDKIKPKNLKSNQNEKAESEEETLGMLLSKIKKKKEYDEEEEEGQISNNVNNRKDVTAVCSNAKNMKTDLSKVSDDEESFRGFSKKAISKVLNSCQTHANVNLLVTESNKKLNSPKILNVSQTADQSAILQKSKVETSPVKTGSSVGYSLNDECNVSVQDQKSVLDLSVKMQSSLLPFVEQTSKKCNHENEVSSNLMPLSTLHTRKERVNMSTEQIEKWLNESSLAKEESKIEMENVSSFRYDSAEKLKADVSHLSISTKIQHLVRPVNVTLSKLSDKMNSKDRVGIHSRNIPVASDMHNTGVKQQNAIIDKNKIITEAKEIVKNKTEKTNKDTSLAEDTSDTVSKSDQNSVDGSIEKKSPTEKKIFQPRKPFLPKVRERKTTTPNANAFSPENESSVYAFESDTEVPVSTPFRRKIRDNAKRSTAIMPTAATVSKTKVIAEVNKSSLKKDSEPPDSKEKSSDDLATSVKKEQETQGSMNVANTAPSVNKFELPKNFASLTSVQVLPLDKLTTSWSNVNCSASIAVQVNLDETTQEQESDANQQKSTEISTQTETSNENDDDNDGQLFYIPLQAVTRSGPNLVQGQQLIQGVAVKLGTEGPTGPNQRVLLRAKLVTKPPLSVAHRCPPIGTVQPTTRTPPNPTAITVEQQVPLTSTTATVSTTIANMPNAEIQPTLLAKSEVSVPSLNRQNVSTNANSSLEKLTKSPKSSRERKASIDSTKSGKRTQMKCKQKGSELCSSSNSMTFPGTKIANDEARVVEAPTFYPTEKDFQDPLEYIDKIRPIAEKFGICRVVPPPNFKPECKVSDDMRFTAYNQYVHRMLHRWGPNVKEIMAIKKYLATQSITLTQPPWIGGMEVDLPHLYQTVQSLGGLKEVIEKKKWQKVADGMKIPKSAQDRVTKLDDIYCKYLLPYDTLSPEERGKLFDEVETEWMKKESKALQRQEVSPNDNEEEEDEDSSDEIEECIVKGRNMPLNAFYRIARNTQRMWFGENQRGNEAEGALADEVENAFWKHVAERKRHVCVHAASIDSSGRGFGFSVAKNSPFARHPWNLKVLTNNAGSVLRALGPIMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPDEHNNNFREALSKMVPRYCKNKTIWLPSDTAMVPPELLVSNGVPLCQIVQEPGQFIIVFPKAFTSSICTGYVVSESVYFAQPSWLETAEQVFKDIQDSCEPSIFSFERLLFNIINDTRSHIDILKQILPSVIKIREKELNYRKQLESVGLTNRERLPLPDSGKGKKGKKVKEDDGDFECETCRANLFVSLINNSQDDSVYCLPHALHLISRKKQVLRHCTLMYTYDEDELDELIHKLENRIEAKSKKTNQIKQNKQER
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01423428;
- 90% Identity
- iTF_00129512; iTF_00128749; iTF_00126487; iTF_00125694; iTF_00127232;
- 80% Identity
- -