Aful019834.1
Basic Information
- Insect
- Aphaenogaster fulva
- Gene Symbol
- -
- Assembly
- GCA_003063765.1
- Location
- NJRO01000003.1:1437249-1440912[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00037 0.045 14.6 1.2 1 23 739 761 739 761 0.97 2 7 0.00048 0.058 14.3 2.4 1 23 819 841 819 841 0.97 3 7 0.00045 0.054 14.4 0.5 1 23 923 945 923 945 0.98 4 7 0.057 6.9 7.7 0.0 1 23 961 983 961 983 0.97 5 7 0.001 0.12 13.2 0.4 1 23 1015 1037 1015 1037 0.97 6 7 0.0013 0.16 12.9 0.1 1 23 1056 1078 1056 1078 0.98 7 7 7.4e-05 0.0089 16.8 0.1 2 23 1084 1105 1083 1105 0.96
Sequence Information
- Coding Sequence
- ATGTCGGACAAGCACGATCCACCAAACATGGCCGATCGCTGCCGAATTTGCCTGATCGACCACGGTTGCATGACCAGCCTGCATAGCGAGCGCGTGGAGGCCAAGCTCAAGGACCTGGCCAAGTGCACCTGCATCGACATCAAGCATGAGGAAAATCTACCCGAAGTTGTGTGCCACATATGCTTGTATAAGCTGAATATGTGGAGCGAGTTCAAGGAACGGTTCATACAATCCAACAAGGTTCTCCTGGAGCAGTTAGATATATCAGAAGCATCTGATAATGCAATTCAAGATTCTTCCAAGGATGGAAAGATGAAAAGAAAGCGTAAAAGGGGCGAGGAAGTTTCTAACATTGAGAAGAAGAAATCAAGGATAAATATATCTTCATTGGAAGGTCTGAACATTGCTTGTGACACAGACCAGATATtagatacaatatatatatcatcagaTGACGATCTAGATTCACCCAAGAAGGATGCAAATAATGGGGAGGAGCATGTGGAAAGTAAAACGTATTCAGGACCAATGAGAGCTAGATTGTTACCTGCGAGACGCGGCAGAAATATTGAACGAAGGAAGGCGTACACGAAACGTTGGGTAGAGAGGAAGAAGGCGCTTTTGGCTTCAATAGGGGAAAACGTGTCCGATACTGATTCCATAGCTTCCGATGATGTGCAATTGTCGCCCGTGCAAAAGGCTCGAGCGAAAACCAATGCGGATAAGGAAATAGAGAGGCAGAGGAAAATAGCAAGAGAGCTGAAAAATCTAGAGATAAATCTCACGGAGAAATACGCCGCGCTTTGTGACAAAGACACGGATTCCGACGCGCGCAGAACGAGATTGAGCAAGGAAATACATTTGAGTGCTTCGCAACAGAGTAAGAAAAATTCGTTGAACCAAATCAGTAAGAAAAACATTGTCGAGGGAAATAAATCCTCTCTAAACAGCTCGATGGAAATTCCGGAGAATTTTCCAAATTTGACAGATAATATTACACTAGACGGCGCGAGGAAGTCTGATGCGCAGGTTGATGACCAAATTTTTACACCTCATTCGTTGAAATCCGAGTTAGTGGTCGGTGACATCACGTATGCTGTAACGTCAACGTTGGTTCTCGTGGACCCATTAAATAATGACAAACAGGACTTGAATAATGTAATGAAGGATTCTAAGAGCCTCAGTCCTGACGAAAGGGAGAAGAATACCGATATCATCGATGCGGTTCAGCTGCGTCGAGTAAATCCCGTGGCAACCAACACAAACAGCAAGTCTAACAGCAAGCAACTTGTCGAAAGATGTTTGAATATTGAAGTAGAGGGTAATGAATTGGCGGTTTTGAAACGCGTACAATATCAATTAGCAGATTTtgtcgagagagaaatgaagaaCAAGTTACTCGGCACGAGCGATGTAAccgataaaaaaatcgataaaacgGATAAGGCGAATAGTGTCACTTTTTTGCACCAAAATCTCGATCAAAAGTTGaaagatataatagaaattgctataaagaaaaatatcgagTCTTCCGTAGGGAGAAAGGATGACTGCCAGGAATTCCCGGTGAAGTTGGCTATGAACTCGTTCAGATATCAACCGAAGGTCCTGATAAAACGCCTAGATATAGCAAAGGAGAGTAAGcgttataacattaaaaacgcTCATATATTGAAGCAGACGTCAAGGAACAAGCTTATCGGACCATTCAGCGTAATCACTCGTAAACGTCAGAGTATACCTCCAGTAAGGTATGGTGATTACAACACCTCCGCATTGAACTCTGATTCCGATGTATtagatgataatgatgataatgatgatgatgatgaagatgatgatTATAATGATGATGATTATAATGCAGCCATTCACGAGACACCCAAAGCGTCCCACTCAAGAAAATACGGGAATCCGGCGACAAGACAGTCATCGATCATTACTGTCAAATCGATGGAAAACAAACAAGATGAACAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGCGTCCCACTCAAGAAAATACGGGAATCCGGCGACAAGACAGTCATCGATCATTACTGTCAAATCGATGGAAAACAAACAAGATGAACAGAAGGCTGATTACGAGGAGGCTATTAGGATAGCTGAGAATCATATATGCGGGGTATGCGGTCTCACGTTTCACTCCCGCAAGGACGTTGAGGCGCACGTTCGTACTCATGAAGCAATATCGGGCGTCTCCGCCGCGCAAATTGTGGTACAAAACGAAAATGCGACCACGTCACCGAAGACGATGGGCAAGCAGGGCAAGCAGAAGATGATGCGCTGCAAGAGATGTCACGAGATAGTCGAGGCACGTCTCGTAAAGGCGCACGTGTGCAAATCGACACTTCACAAATGTTATGTCTGCGATTCTATGTTCCGCACAAAGAACCTTCTCGCAAAGCACTTGGAGAGCCACGATCATTCCGAATTCAACATAGTAAACGCAATCGGAAACAAGAAGACCAACAATTCTGACGCGTTGCTGAAAATTATATCGACTGCGTCCACATCACCGCAGAAGGATCCAGCTCAAGGAACTGAAACTGCGACAAAAACGCAGGCTACTCTAAGCGAAAAGAATGACATCCAGTCCGACAAGATAACTAGTACAGGCGGAAAGCTGGATAGCACTGAAAATGTAAAGAAGCCTAAAGAAACGTACACCTGTTTCGTGTGCGATAAAATCTTTACGGATGAGGAAATATTGAAAGATCACTTACAGAAGCATTGCGACGATCTGAGCGAAGGAGAGCAAAGCAATAGCAAGGAGCAATATCAATGTGCTATTTGCGGCAATACTCTGGAATCAGATCAAGCGTTAGAAGAGCACGTCAGCAAACACTTGTTTGATGATGAAGATGACAACCCCAATCTGATTAGCATAGACCAAGGcaatgagaataataataataataaagcaaagGAAACCGAGACATATCAGTGCGGCCAGTGCTCGGAGACGTTTGATTCAGAGATATTGCTGGAGATGCACATGCATGCTCATGAGGAGGAAGTCGCGATATCGGAATGGGAGAAGCAAGGATTAAAAGTCTATCAATATCAATGTATGCTCTGCGACGAATTGTTCGACACGGAAGAGGACTTGGCAAAACATTTAGATATACATAACGCAAACGCGCAAGTATGTCAGTTGTGTGACAAGCCGTTCCGCACGTTAGAGGACCTACAAGAACATGTCGCGAGTCATTGA
- Protein Sequence
- MSDKHDPPNMADRCRICLIDHGCMTSLHSERVEAKLKDLAKCTCIDIKHEENLPEVVCHICLYKLNMWSEFKERFIQSNKVLLEQLDISEASDNAIQDSSKDGKMKRKRKRGEEVSNIEKKKSRINISSLEGLNIACDTDQILDTIYISSDDDLDSPKKDANNGEEHVESKTYSGPMRARLLPARRGRNIERRKAYTKRWVERKKALLASIGENVSDTDSIASDDVQLSPVQKARAKTNADKEIERQRKIARELKNLEINLTEKYAALCDKDTDSDARRTRLSKEIHLSASQQSKKNSLNQISKKNIVEGNKSSLNSSMEIPENFPNLTDNITLDGARKSDAQVDDQIFTPHSLKSELVVGDITYAVTSTLVLVDPLNNDKQDLNNVMKDSKSLSPDEREKNTDIIDAVQLRRVNPVATNTNSKSNSKQLVERCLNIEVEGNELAVLKRVQYQLADFVEREMKNKLLGTSDVTDKKIDKTDKANSVTFLHQNLDQKLKDIIEIAIKKNIESSVGRKDDCQEFPVKLAMNSFRYQPKVLIKRLDIAKESKRYNIKNAHILKQTSRNKLIGPFSVITRKRQSIPPVRYGDYNTSALNSDSDVLDDNDDNDDDDEDDDYNDDDYNAAIHETPKASHSRKYGNPATRQSSIITVKSMENKQDEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKASHSRKYGNPATRQSSIITVKSMENKQDEQKADYEEAIRIAENHICGVCGLTFHSRKDVEAHVRTHEAISGVSAAQIVVQNENATTSPKTMGKQGKQKMMRCKRCHEIVEARLVKAHVCKSTLHKCYVCDSMFRTKNLLAKHLESHDHSEFNIVNAIGNKKTNNSDALLKIISTASTSPQKDPAQGTETATKTQATLSEKNDIQSDKITSTGGKLDSTENVKKPKETYTCFVCDKIFTDEEILKDHLQKHCDDLSEGEQSNSKEQYQCAICGNTLESDQALEEHVSKHLFDDEDDNPNLISIDQGNENNNNNKAKETETYQCGQCSETFDSEILLEMHMHAHEEEVAISEWEKQGLKVYQYQCMLCDELFDTEEDLAKHLDIHNANAQVCQLCDKPFRTLEDLQEHVASH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00128502; iTF_00129263; iTF_00130009; iTF_00127004; iTF_00126240;
- 90% Identity
- iTF_00128502; iTF_00129263; iTF_00130009; iTF_00127004; iTF_00126240;
- 80% Identity
- -