Basic Information

Insect: Aphaenogaster fulva
Gene Symbol: -
Assembly: GCA_003063765.1
Location: NJRO01000011.1:921875-923583[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.013 1.5 9.8 0.6 2 23 218 240 217 240 0.91

2 9 0.14 16 6.6 0.3 1 23 252 275 252 275 0.94

3 9 0.13 16 6.6 4.3 1 23 288 311 288 311 0.93

4 9 7.3e-05 0.0087 16.9 6.4 1 23 317 339 317 340 0.95

5 9 0.069 8.2 7.5 0.3 3 23 347 368 345 368 0.94

6 9 0.00037 0.044 14.6 1.5 1 23 373 396 373 396 0.98

7 9 7.8e-07 9.4e-05 23.1 0.2 2 23 403 424 402 424 0.96

8 9 0.00014 0.017 16.0 1.8 3 23 432 452 427 452 0.88

9 9 1.8e-05 0.0022 18.8 1.0 1 23 458 480 458 480 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.013	1.5	9.8	0.6	2	23	218	240	217	240	0.91
2	9	0.14	16	6.6	0.3	1	23	252	275	252	275	0.94
3	9	0.13	16	6.6	4.3	1	23	288	311	288	311	0.93
4	9	7.3e-05	0.0087	16.9	6.4	1	23	317	339	317	340	0.95
5	9	0.069	8.2	7.5	0.3	3	23	347	368	345	368	0.94
6	9	0.00037	0.044	14.6	1.5	1	23	373	396	373	396	0.98
7	9	7.8e-07	9.4e-05	23.1	0.2	2	23	403	424	402	424	0.96
8	9	0.00014	0.017	16.0	1.8	3	23	432	452	427	452	0.88
9	9	1.8e-05	0.0022	18.8	1.0	1	23	458	480	458	480	0.98

Sequence Information

Coding Sequence: ATGCTGATCAACAAGAAAAATAGTTTTAGCTCCTCGTGCGAAGGCGCTTACAATCCTCGTGGTATTTTCATCTTTGATAATGAATCGTTGGTGATGAAGAAGTGGCAAATTTTAGAATTTGACGGCAAGCCGTATTACGCGTTTGTACCCGAAGGCGATATGCCTTTACGAGACGAGGATATACCAGAACAAGTAGAGATGCAATTACAGGATGAAGTAGAAGAAGTAGAAGATGGAAATGTTACTATAGACGACATGAAACAGGAGTGTCACTTCAAGGGGGAAGAAGAATACGACACTTCTAtggaagagaaattatataatgttgaGACTACCCTTAatgaaaatgttgaagaaatagagGAACCGGATATGAAGCCGATCACATTGAATGGCATCAGTGAAACTGTGGATGATAAGACGGCTGGAAATTTATACAAAGTAAAAGTACAGGGCAGTACGGTGACCATCGAGAAATTTACGTCCAATACTGAAGTAGACGCAAAAGGAAGCGAGGATCAGATGGAAGACGTAAATGACGATGAGGGAGAGATAGAATATCTTGAGGAAGAGATAGTAAACGTACCTAACACTCGTGACAATAATGCATCTCTTACGAAAACGTCTGTAAAGATCTTCAGTGAGCCTCTGAAGTGTAAATTGTGCTCGGAGACGTTCGACACGGTTTTATCTTTCAGGAAACACGTAGCGTGGACccataagaaaaagatatacataaaagAGGATGGCGCTTACATATGCGCCGTGTGCGGCTTTAGAACACTGAAGAAGAGCTCATTTGCCGCTCATTTGGAGAGGAAGCATGATACTTGGTCCAGGAAACGATCTAGCAACACGAAATTCCCTTGTGCCGCTTGCGGCTTTATTTGTAGATCGAAGCATTCCTTGCAGTCCCACTTCACAAGGAAGCATACGGATAATTACGAGCACCAGTGCAACTTCTGttcaaaaaaatttaaggtCAAGGGTGATCTAACGAATCATATACGATTCCATCATAAAGAGAAACCAATCAACTGCGACGTGTGTGGCAAACTGTGCCTTAACAGCGGCTCGCTGTACGTGCATCAGAAATGGGCACACTACAAGCCCAAGTATGAATGTCACATCTGCAAAAGACGTATGGTAACGCAGGAGAATCTGGATCAGCATTTACTGACGCAGCACGAGAAACGCGACAAGATAGTTTGCGCGGAATGTGGTAAAACCTTCGCAAAGAAAGATTCGTTTAAGAGGCACATGGTAGTGCATACGGGATGCAAACCACATGCCTGTATAATCTGTAGTAAACCCTTCGCGCGGAGGTCTCAATTGCGCCAACATCTGCTTATCCACACTGGCAAGCGACCGTTTGTATGTGACATATGTGGAAAAGCGTTCACGCAGAAGCCAGGCTTGATCTGCCACAGGAAAACTCACCCCGGCTCACATCCGCCGTTGCCCGTGATGCCAATCGCGGACATCGTTAAAGAGTTCACTGACGGATACGTACAGGAAATTAACGCCCGAGAAAACGAAGAGAAGATTAACGAGGAAGTGTGA
Protein Sequence: MLINKKNSFSSSCEGAYNPRGIFIFDNESLVMKKWQILEFDGKPYYAFVPEGDMPLRDEDIPEQVEMQLQDEVEEVEDGNVTIDDMKQECHFKGEEEYDTSMEEKLYNVETTLNENVEEIEEPDMKPITLNGISETVDDKTAGNLYKVKVQGSTVTIEKFTSNTEVDAKGSEDQMEDVNDDEGEIEYLEEEIVNVPNTRDNNASLTKTSVKIFSEPLKCKLCSETFDTVLSFRKHVAWTHKKKIYIKEDGAYICAVCGFRTLKKSSFAAHLERKHDTWSRKRSSNTKFPCAACGFICRSKHSLQSHFTRKHTDNYEHQCNFCSKKFKVKGDLTNHIRFHHKEKPINCDVCGKLCLNSGSLYVHQKWAHYKPKYECHICKRRMVTQENLDQHLLTQHEKRDKIVCAECGKTFAKKDSFKRHMVVHTGCKPHACIICSKPFARRSQLRQHLLIHTGKRPFVCDICGKAFTQKPGLICHRKTHPGSHPPLPVMPIADIVKEFTDGYVQEINARENEEKINEEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00765885;
90% Identity: iTF_00126982; iTF_00129255; iTF_00128491; iTF_00130000; iTF_00126228;
80% Identity: -