Basic Information

Insect: Aphaenogaster fulva
Gene Symbol: -
Assembly: GCA_003063765.1
Location: NJRO01000273.1:137999-140290[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0078 0.94 10.5 0.4 1 23 355 378 355 378 0.96

2 10 5.9e-06 0.00071 20.3 0.5 1 23 384 406 384 406 0.99

3 10 1.1e-07 1.3e-05 25.7 0.3 1 23 412 434 412 434 0.99

4 10 0.25 30 5.7 5.4 1 23 440 462 440 462 0.98

5 10 7.8e-06 0.00093 19.9 0.3 1 20 468 487 468 488 0.96

6 10 0.021 2.5 9.1 2.3 1 23 497 517 497 517 0.94

7 10 1.2e-06 0.00015 22.4 0.5 3 23 525 545 524 545 0.98

8 10 0.00012 0.015 16.1 1.4 1 23 551 573 551 573 0.98

9 10 0.0013 0.16 12.9 3.4 1 21 579 599 579 602 0.96

10 10 0.12 15 6.7 3.8 3 23 610 631 608 631 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0078	0.94	10.5	0.4	1	23	355	378	355	378	0.96
2	10	5.9e-06	0.00071	20.3	0.5	1	23	384	406	384	406	0.99
3	10	1.1e-07	1.3e-05	25.7	0.3	1	23	412	434	412	434	0.99
4	10	0.25	30	5.7	5.4	1	23	440	462	440	462	0.98
5	10	7.8e-06	0.00093	19.9	0.3	1	20	468	487	468	488	0.96
6	10	0.021	2.5	9.1	2.3	1	23	497	517	497	517	0.94
7	10	1.2e-06	0.00015	22.4	0.5	3	23	525	545	524	545	0.98
8	10	0.00012	0.015	16.1	1.4	1	23	551	573	551	573	0.98
9	10	0.0013	0.16	12.9	3.4	1	21	579	599	579	602	0.96
10	10	0.12	15	6.7	3.8	3	23	610	631	608	631	0.97

Sequence Information

Coding Sequence: ATGATTAGCATGCAGCAGCAGACGGTCTTGAACAATTTAACCGGGCCCGAGCAGCCGCAGGAAGAAGTTCAGCTGACCGAATTGCTGCCGGTGAAGCAATCTCGCATCAGAGAAAATGTCTTCAAGGATGCTGACGCGACCGACGCTCTGAGGGCGCTCAGAAGTCTCTCGGGTGACTGCGGCGATGGCGAAAGCTTTGATCTGCGGGAGTTCAACTTCTGCAAGAGTGTCGAACAATCGGAACGCCAGGGCAGCAAGCATCGACGAGTGGAGGCTCATCGGAAAAGAACAGAAGAGATCAAGAGCAGTGCTAAGGACGTGGATttcgataaaaagaaaaatagcgaGGTGACGGAGAAGAAAGTGCGTAACGGTAGGAAAATTGCTCACGCGAAAGTGCCGAAGAGGAAACTGGTGAGATCGAACAAGAAGAAGGACGACGACAGAGAGAGCGATTATGGAATGAATGAGAAATCGATCAGGAAGAATACCGCCGGATGCGACGAAAAGTTTGCGCCCCACTGCGATGAAGAGGACGGCGACGAACAATTGTATTTAGATCTAGAAAAAAAAGACTGCTTTAAGGACGAGGTTTACGTATATAGACGGGAACCGCTGGATCCATGCTCGAATTCGGAGTCAGAGATACCGGGAGCGATCAATCATAAGGATCTTTGCAAGGATTACCCCACCACGGATGGAGAATTGTTCGATGGAAAGGGAAAATTCACTAGAAAGACCTCCaacataaataatgagaaagaaaaatgcaaGTCCAAGACAGGTAgtattattgaaaaagaaaatcccGAAAAGGAGCTCAGATTAAAGATCGACGCCATTATTCAAGCGAATTACTTGCTGGAACGCGAGAATAACAACGTTGTCGGTTCTGACGGACTCAAAATCGCGGAGCACATTAGCTCCTCTTCCGCTGCCGCCTCGGTGACCGCGGAAAACAGTGATAGCTCTCTGTGTAACTTGGTAGAGACGAATAAAACGAAGAGAAAGCGAACTGATCAGACCAGACAGTTGAAGGACCAACAGAATCCTCAGAAGAAGTACTGCTGCGTCGTATGCGACGCGCTTTTCAAGGGTAGCGGTGGTCTGCGGAATCACTACAAGGTGGTGCACGGTGCCGGGCCGGTGTTCAAGTGCGACGAGTGCGGCAAGGAGTTCCCGCTGAAGGAGCGGCTGAAGCTGCATGTGCGCACGCACACCGGCTTCAAACCGTACAAGTGTCCAGAGTGCGACAAGAGCTTCGCGCGGGGTGGCCAGCTGGTGCAGCATCGTCGCACGCATAGCCAGGTCAGGCCGTTCCACTGCAAGCTGTGCTCTAACACCTTCACGTGCGCGGCCAATCTGTCGCTACACCTGAAGCGTCACAACGGCCAAAAGGATCACAAGTGCGACCTGTGCGGACGCGCCTTCGTGCGTCGCGACGCCCTGAAGAAACATCTGGAGTGCCTGCATCGCGACGTCAAGTCGTTCCTCTGCGCGATCTGTAACAAGACCTTCAAGGGTCACCTACCGCAGCACATGAGGACACACGCGCGCGACCGTCCGCACGGCTGTGCTACATGCGGCCAGCGTTTCGCCCAGAAGTCCCAGCTGACCGTACACCAAAGGACCCATTCCGGCCAGCGACCGTTTCGCTGTCTAGTCTGCTGGCAAGCGTTCGCCCATTCGACCGCCCTGAAGCTGCACACCCGACGTCACACTGGGGAACGGCCGTTCAAGTGTTCCGAGTGCAATGCCGGCTTCACTCAACTGCCACATTGGAAGAAACACATGAAATGCATACACGGGAGAAATGATCCATACGGTTGCAAACGTTGTAAGAGCTTTTTCAGGATTAAGAGCGACTTGGAGAGCCACGAGAAGACTTGTCATCCAGAGATAGAGGCGGAGGATGACGATAGTAGCGTTCCCAGTTCGAGACCAGCCAGCGGCTCCGAGGTTGTCGAGAAGAACTCTGTCACCGCGAAATACAAGCTGATGACGGTGGAGAAGATGCGGCTGTTATTGGCGGTGCTGCTGAAGAGGATCAGTAAGCAAGAACGGTTGGATGAGCTCGGCTTCGGCAAACGTCTCATCGACGACGTTCTTCAGGATTCCCTAGTGTCCGCTGGTAAGGAACCGGTCATGGGGAATGGTTTGACCGAACTTGAGGCTCTCACCCGGAACCTAGAACTCTTTCTGGAATGGACAGTGCCGAAGGAGCACTGGGAGAATTTTCGTAGAATGAAAAAGTCGCCCGAAGATATTCTGGAAACGCTCACAGCTACGTAA
Protein Sequence: MISMQQQTVLNNLTGPEQPQEEVQLTELLPVKQSRIRENVFKDADATDALRALRSLSGDCGDGESFDLREFNFCKSVEQSERQGSKHRRVEAHRKRTEEIKSSAKDVDFDKKKNSEVTEKKVRNGRKIAHAKVPKRKLVRSNKKKDDDRESDYGMNEKSIRKNTAGCDEKFAPHCDEEDGDEQLYLDLEKKDCFKDEVYVYRREPLDPCSNSESEIPGAINHKDLCKDYPTTDGELFDGKGKFTRKTSNINNEKEKCKSKTGSIIEKENPEKELRLKIDAIIQANYLLERENNNVVGSDGLKIAEHISSSSAAASVTAENSDSSLCNLVETNKTKRKRTDQTRQLKDQQNPQKKYCCVVCDALFKGSGGLRNHYKVVHGAGPVFKCDECGKEFPLKERLKLHVRTHTGFKPYKCPECDKSFARGGQLVQHRRTHSQVRPFHCKLCSNTFTCAANLSLHLKRHNGQKDHKCDLCGRAFVRRDALKKHLECLHRDVKSFLCAICNKTFKGHLPQHMRTHARDRPHGCATCGQRFAQKSQLTVHQRTHSGQRPFRCLVCWQAFAHSTALKLHTRRHTGERPFKCSECNAGFTQLPHWKKHMKCIHGRNDPYGCKRCKSFFRIKSDLESHEKTCHPEIEAEDDDSSVPSSRPASGSEVVEKNSVTAKYKLMTVEKMRLLLAVLLKRISKQERLDELGFGKRLIDDVLQDSLVSAGKEPVMGNGLTELEALTRNLELFLEWTVPKEHWENFRRMKKSPEDILETLTAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00126190;
90% Identity: iTF_00126948;
80% Identity: -