Aful012539.1
Basic Information
- Insect
- Aphaenogaster fulva
- Gene Symbol
- -
- Assembly
- GCA_003063765.1
- Location
- NJRO01000011.1:933929-950639[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0024 0.29 12.1 2.7 2 23 79 100 78 100 0.97 2 13 5.4e-05 0.0064 17.3 1.6 1 23 102 125 102 125 0.96 3 13 0.00046 0.055 14.3 1.5 1 23 130 153 130 153 0.97 4 13 0.0001 0.012 16.4 2.1 1 23 159 182 159 182 0.95 5 13 0.0005 0.06 14.2 0.8 2 23 189 211 188 211 0.95 6 13 0.00078 0.093 13.6 0.2 1 23 216 238 216 238 0.97 7 13 0.00032 0.038 14.8 0.5 3 23 246 265 245 265 0.98 8 13 0.00069 0.083 13.8 3.7 1 19 271 289 271 300 0.91 9 13 0.0075 0.9 10.5 0.8 3 23 308 329 306 329 0.95 10 13 7.8e-05 0.0094 16.8 0.2 1 23 334 356 334 356 0.97 11 13 2.7e-06 0.00032 21.4 0.1 2 23 363 384 362 384 0.97 12 13 2e-06 0.00024 21.7 0.1 1 23 390 412 390 412 0.98 13 13 0.00098 0.12 13.3 2.1 1 23 418 440 418 440 0.97
Sequence Information
- Coding Sequence
- ATGCAAACTTTTACCTTTTTATGTTTTAGAGTGGCAGATCCATTGAACGTTGAACCCAATGTCCAGAAACTATTCGACAGAATTGAATGCGAATggacaaaaagagaaaagtcGTTAACAGAACATGAAGGACGACTGTTAGAAAAGATAAATGCAAATCTCACAAGAGAGCAGATTAGTCCGCGGATCGTAACTGAAGAGAATCGACCAACTAGAAAGAAGATGACGTGTGTAGAGTGCGATCACTGTCGTCGCAAGTTCTTGAAGAAGAGCAATCTCGCCGAACATCTGAAGCAGCATAGGCACAAATGCGCCGACTGTCCAAAGACCTTCAGTCTTCGGCGTTATCTGGTTTCCCACATCGAAAAGAATCATCGGCAGCAGATGTACGAGTGCAGCGTGTGCAAGTACAAGAGCAACAACAAAGGTACCCTCAAGAATCACTACATTCGACTGCACACAAGCAACTACGACTACGCGTGCGACACGTGCGGCAAGCAATTCAAGATAAAGAAGGCCCTGAATCACCATGTGAAGCAGAATCACAGCGAAGCTCCGCCGATCGTGTGCGACGTCTGCGGTCACTTCAGCAAGAACCTCCAAGCCCTCAAGGCTCATATGAAGTATAGGCACTACAAGCCGGAGTTCGTCTGCCGGATATGTCGACGAGGTATGACCACGCAGGAGAACTTGGAGCAGCATCTCATGTGGCACGAGACTAGGGAGAAGGTACTTTGTCCGACTTGCGGCAAGAGATTTCGGGGACGCGACCTGGACTCGCATATGAGAGTACACACCGGAGTGAAACCGTTCCCCTGCCCTGTCTGCGGAAAGACTTTTCGACGGCAAACTGCTCAAGAGCAGCACAACGACCTAAAGCAACATATGAATCAGGTGCACAGCGGCGAGCCGCCCATCATCTGCAGCATCTGTGGACACGCTTGCAAGAATGTGCCCGCCATCAAAGCACACATGAAGTATCGACATTACAAGCCGGCTTACGAATGCAAGATATGCAAGCGCGGTCTGACCACGCAGGAGAATCTCGACCAACACCTTATTTGGCACGAACGAAAGGAAAAGGTCGTCTGTCCCACCTGTGGCAAGACCTTCGGTCAGAAGAGGGACTTGGATCTTCACTTGAGGATTCATCAAGGTATCCGGCCGTTCTCCTGTCCGGTCTGCGGCAAAACTTTCCCCAGGAAAACTGCGCAAGAGCAACACATATTAATTCACACCGGCAAAAAGCCATATATCTGCGACATATGCGGACATACCTTCGCGCAGAAACCCGGACTCATCTGCCACAGGAAACGACACCCTGGACCACTACCGCCGTTGCCTGTGGTATCcattaagaaaataatcatGGACTTTACGCAGGAATTGGTTTCTTCTACACAACAAGATAAAGTagatagttaa
- Protein Sequence
- MQTFTFLCFRVADPLNVEPNVQKLFDRIECEWTKREKSLTEHEGRLLEKINANLTREQISPRIVTEENRPTRKKMTCVECDHCRRKFLKKSNLAEHLKQHRHKCADCPKTFSLRRYLVSHIEKNHRQQMYECSVCKYKSNNKGTLKNHYIRLHTSNYDYACDTCGKQFKIKKALNHHVKQNHSEAPPIVCDVCGHFSKNLQALKAHMKYRHYKPEFVCRICRRGMTTQENLEQHLMWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFPCPVCGKTFRRQTAQEQHNDLKQHMNQVHSGEPPIICSICGHACKNVPAIKAHMKYRHYKPAYECKICKRGLTTQENLDQHLIWHERKEKVVCPTCGKTFGQKRDLDLHLRIHQGIRPFSCPVCGKTFPRKTAQEQHILIHTGKKPYICDICGHTFAQKPGLICHRKRHPGPLPPLPVVSIKKIIMDFTQELVSSTQQDKVDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -