Aful006431.1
Basic Information
- Insect
- Aphaenogaster fulva
- Gene Symbol
- -
- Assembly
- GCA_003063765.1
- Location
- NJRO01002459.1:16523-18721[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-08 4e-05 23.6 0.0 2 38 23 58 22 63 0.88 2 2 7.8 8e+03 -2.9 0.0 25 40 361 375 360 379 0.63
Sequence Information
- Coding Sequence
- ATGAATGTTaagtTTTCCACAACCAAGGAAAATCAACagcaaaagagaaaattatttttgtattcacCAACAAAGGTACGAGAAGCTTTAGTTGCTATTCAGAATGGTACACCAGTCTCGACAGCAAgtaaaatttatcaagtacCAAGAACAACTTTGCGACATAAAATTCGAGGTGAAGCACCAGTGATCACTGGACATGTAGGTCGTGAATCAGTATTAGGTTCTCGTGTAGAAGCTATTTTGGTGCATTGGTTGTTGGAAACATGTCGAATGGGATTCCTTAtcacaaaaaatgttttgttgaaTTCAgtcaaaaaatttgttgaaaccAAACATTTAGAAACTCCATTTACATATAACACGCCAGGACGTAAATGGTTTGAGAACTTTATGAAACGACACCCTGCTTTATCTATGAAGAAAGCTGAATACTTAAGTAAGACAAGAGCAGCTGTTACTGAACAATATATTCGTAATTGGTTTTCTGAAGTACAGATTTTACTAAAGGATAATTTAGAAGTTCTTGAAGACCCGCAAAGAGTATTCAATATGGATGAGATAGCAGTGTACTTAGCTCCTAAAGGAGGATTAGTTATTGCAGAGAAGGGAAAACCAACGTATGACGTTTTTACTAGCAgtgataaagaaaatattactacGCTTTTTACTGTAAATGCTGCAGGAGAAATAGCGCCACCTCTAACAGTTTTTAAGTACGAACGCTTGCCTCAAACTTGTTTAGCCAAAGCTCCACCTGATTGGGGCATTGGTAAAAGTGAAAATGGATGGATGACATATACAGCCTTCTACGAGtattttgcaaatgtttttaataaatatctacaaGATGAGAACATAAAAAAACCAATTATTGTTTTCCTAGATAGACACATATCACATATGTCATACTGCTTAAGTGCTTTTTGTAAAGagcaacaaattatattatgctGTCTCCCTCCAAATGCCACACATATTTTGCAACCTCTTGATGTAGCAGTGTTCGCTTCATTAAAAAAGCACTGGCAAAAGTTTGTGAAAACTTGGCGTTCAAGTCATGATGGGATggatatacaaaaatttgatattcCCAGTGCATTATcagaaattattaaagaaaaaaacttttcaaaaactattcaaGCTGGTTTCAAGTGCTGTGGACTTTATCCCTTTGATCCAAACGCTGTCAAGTATGATAAATGTGTAACGCAAACACAAATTGCATCTGATGTAGTTGAGACTGCGAATCAACATTCTGTTTTAACTTCAATAAACACAGAACTATTACAAGaactggaaaaaaatatgaatgtaaatattttgcaacGTTTCAAGGAATTGAAGAGTAACAAATTGAATTGGAATGGAGAAACTGAATATTCAGCTTTATTCAATACTtggagtaaaatttacgatgatgtttacgataaaaatattactttgaaTCAAACTATTGATGTAAATAGTTTGGAGATATACATTGAAGAATCGGAAGAGATTTCGAATCGTaagtatattaaagaatttattaaatttacttaa
- Protein Sequence
- MNVKFSTTKENQQQKRKLFLYSPTKVREALVAIQNGTPVSTASKIYQVPRTTLRHKIRGEAPVITGHVGRESVLGSRVEAILVHWLLETCRMGFLITKNVLLNSVKKFVETKHLETPFTYNTPGRKWFENFMKRHPALSMKKAEYLSKTRAAVTEQYIRNWFSEVQILLKDNLEVLEDPQRVFNMDEIAVYLAPKGGLVIAEKGKPTYDVFTSSDKENITTLFTVNAAGEIAPPLTVFKYERLPQTCLAKAPPDWGIGKSENGWMTYTAFYEYFANVFNKYLQDENIKKPIIVFLDRHISHMSYCLSAFCKEQQIILCCLPPNATHILQPLDVAVFASLKKHWQKFVKTWRSSHDGMDIQKFDIPSALSEIIKEKNFSKTIQAGFKCCGLYPFDPNAVKYDKCVTQTQIASDVVETANQHSVLTSINTELLQELEKNMNVNILQRFKELKSNKLNWNGETEYSALFNTWSKIYDDVYDKNITLNQTIDVNSLEIYIEESEEISNRKYIKEFIKFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -