Aful009322.1
Basic Information
- Insect
- Aphaenogaster fulva
- Gene Symbol
- -
- Assembly
- GCA_003063765.1
- Location
- NJRO01000576.1:36410-39436[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.2e-11 3.3e-08 33.5 0.6 5 39 1 35 1 40 0.87 2 2 4.8 5e+03 -2.3 0.0 30 38 84 92 84 97 0.83
Sequence Information
- Coding Sequence
- ATGAAGAGAGCCGTTGATGCTGTCGCCAAAGGGATGTCTTTGAGGAAGGCCGCAAGTATCTACTCCATATCCAAATCAGCCGCACGTTATGCACGAATTCGCGAGGAAGAGTCGCAGCCGCGTCTACGAACGATGTTCTCTAACCGGGTTCCcgtgttcttttatttttcagatgCGCACACGGTGGGTTATCTGAAATGCCAGAGGGTGACATACCCTTGCAGGAATTGCGGCAAGGTCTATAGCTACTACTCCAGTCTGGCCAGGCATCTGAAGCACGAGTGCGGCGTGGAGCCCAAGTTCCACTGTCCTTTGTGCCCTTACAGGACGAAGCACAAATCGAGCCTGAACACTCACCTGAACGGCAGGCATATGAAGTTATTGAGCGAGTTTTATACCTTGCCCAATGGCAATAAGACGTCTTCAACGGATGCCGGGAATTAA
- Protein Sequence
- MKRAVDAVAKGMSLRKAASIYSISKSAARYARIREEESQPRLRTMFSNRVPVFFYFSDAHTVGYLKCQRVTYPCRNCGKVYSYYSSLARHLKHECGVEPKFHCPLCPYRTKHKSSLNTHLNGRHMKLLSEFYTLPNGNKTSSTDAGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00128579; iTF_00130087; iTF_00127801; iTF_00127067;
- 90% Identity
- iTF_00128579;
- 80% Identity
- iTF_00128579;