Basic Information

Insect: Aphaenogaster floridana
Gene Symbol: hb
Assembly: GCA_003063835.1
Location: NJRP01001037.1:16668-18694[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.017 2 9.5 0.1 2 23 32 53 31 53 0.96

2 7 0.73 84 4.4 3.5 3 21 131 149 129 151 0.94

3 7 0.098 11 7.1 6.8 1 23 155 178 155 178 0.96

4 7 0.00085 0.099 13.6 6.0 1 23 184 206 184 206 0.99

5 7 0.023 2.7 9.1 5.0 1 23 212 236 212 236 0.93

6 7 0.15 18 6.5 0.0 2 20 558 576 557 577 0.93

7 7 0.026 3 8.9 2.4 1 22 585 606 585 609 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.017	2	9.5	0.1	2	23	32	53	31	53	0.96
2	7	0.73	84	4.4	3.5	3	21	131	149	129	151	0.94
3	7	0.098	11	7.1	6.8	1	23	155	178	155	178	0.96
4	7	0.00085	0.099	13.6	6.0	1	23	184	206	184	206	0.99
5	7	0.023	2.7	9.1	5.0	1	23	212	236	212	236	0.93
6	7	0.15	18	6.5	0.0	2	20	558	576	557	577	0.93
7	7	0.026	3	8.9	2.4	1	22	585	606	585	609	0.90

Sequence Information

Coding Sequence: ATGAATGACTACCAGGCTAATCGATCGTTGAACACCATGTCAAATATCATTCCGTTATCCAACGAGAGTATCAATCCAACGCGAGACATTCTGCAGTGTCCGTTATGTGTATTTGCTGCATCAAACAGATCAGAATTCACCGAGCATCTAATTAGCCATTGCACGCCGACGAGACACAACAATTCCAATCTTAAAGCCGTCCTTACACATTTACCAGCACTTAAATTTCCCTCAAGTCAAGACGGTGACAATTGTTCTTCTTCTATACCAACAACGGAATATATCGAACACGAGACAGAGAAGACCGAAGAATCTTCTCTTTGTATATCCCGCGTGAATCGGAGCAACGGAGTAAAGAGACGAGATAGAAGCTTCCGAGAAGCCAAGAATTGTAAGCAGTGCAATTTCACGACTGGCACGAAGATGGAATATTGGGAGCACATGCGCTGCCATATCAAAGGCTTTACATGCTCCGAATGCTCTTTCGTTACCAAATACAAGCATCACATGAACCATCATTGGCTTAGTGTTCACGATGGCTCCAAGCCCTTTAAGTGCAAAAAATGTTTGTACACGTGCGTAAGCAAATCGATGTTGACCAGCCACCTGAAAAAGCATTCAAACATCTATCCGTACAGATGCGCGGACTGTACATACAAGACCAAGTTCTGCAATGCGCTAAAGAAGCACCTGCGAAAGAAGGAGCATCAGCCGGCGATGGTGCTGAATGCTGACGGCTCACCGAATCCGCTGTCCATCATTGATATTTACGGTACCAAACGCGGGCCCAAGCAGAAGCCCCCATCCGTTAAAAAGCAAGAGGAACAAAAGAGCGTCGTtgtggcgacgacgacgacgaccaacACGAACGATCAGCAGCTTGATTCAGCAGTGACTTCTCCTGCACTCTCGTCGCTCCTTCACTCGCCGTCCCCGGTTACTCGTTATTTGACTGTAACCGCGGTAAAGGGAGTAAACGATGCAGCAGGGCATTGGATAAATCATTATAGCATGAATAAGAACATCCCATCTGTCGCGACGTTCCCTTACAGCGATTTAGTTGCCGCGTTCAATTTGTCAAATCATGTCTCGCTTCGCAAAGACGCGACATTCTACGAAAATGTGCAAAAAACGGATCACGCACAGTCCGATATGTTAATATCGGACTACGCAAGGATTTTGAATACCGAGAACAAAATGCCGGAGATGTTTGCTCAAAGTTTGCCTATAACTAATTTCGACACAATTAACAACGTCAGCAAATCTCACACCGCCTCCGATAGCACGAAGGCTACTCCAAGCGAATCCTCGATATTCGTGACGTTAGAAACCCAGCTAGAATATCAAAAGACCAAATCTACAGACGTGCCGTTGGATCTCCGCATGGCCGAGGTGATGATGAAAAAGAATCAGCTTCAATTTCAAACATTAGCAAGTACGAATTTACCAAAAGTCACCGGCACCAGCAAACGTAAGGGTAAAGCGATAAAGTTGAAACGTCGCATGACGACGTTATTAAAAGAGGACACGGACAAAAAGCTAGAGCAAAACGAAGGTGTTCTATCTTTCGAGTCTCCGCCGGATAGTAGGCCCGATTTCCGCGATGTAAATCAGAGGATCAAAGACACTAAGAACGAAAAAGATATTGCCGATTTATTCGATGCCGAGCTCACCTGCCACTACTGCGAGATCATATTCGGTAACGTGATTATGTACACCGTGCATATGGGTTGTCACAGTTTTGATGATCCCTATACATGCAATATATGCGGCCACCAATGTATCGATAAATTATCCTTCTTTCTGCATATCGCTCGGTCGGAGCAttaa
Protein Sequence: MNDYQANRSLNTMSNIIPLSNESINPTRDILQCPLCVFAASNRSEFTEHLISHCTPTRHNNSNLKAVLTHLPALKFPSSQDGDNCSSSIPTTEYIEHETEKTEESSLCISRVNRSNGVKRRDRSFREAKNCKQCNFTTGTKMEYWEHMRCHIKGFTCSECSFVTKYKHHMNHHWLSVHDGSKPFKCKKCLYTCVSKSMLTSHLKKHSNIYPYRCADCTYKTKFCNALKKHLRKKEHQPAMVLNADGSPNPLSIIDIYGTKRGPKQKPPSVKKQEEQKSVVVATTTTTNTNDQQLDSAVTSPALSSLLHSPSPVTRYLTVTAVKGVNDAAGHWINHYSMNKNIPSVATFPYSDLVAAFNLSNHVSLRKDATFYENVQKTDHAQSDMLISDYARILNTENKMPEMFAQSLPITNFDTINNVSKSHTASDSTKATPSESSIFVTLETQLEYQKTKSTDVPLDLRMAEVMMKKNQLQFQTLASTNLPKVTGTSKRKGKAIKLKRRMTTLLKEDTDKKLEQNEGVLSFESPPDSRPDFRDVNQRIKDTKNEKDIADLFDAELTCHYCEIIFGNVIMYTVHMGCHSFDDPYTCNICGHQCIDKLSFFLHIARSEH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00130092;
90% Identity: iTF_00128583;
80% Identity: -