Basic Information

Insect: Aphaenogaster floridana
Gene Symbol: -
Assembly: GCA_003063835.1
Location: NJRP01000300.1:162333-167125[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 5.4e-06 0.00063 20.5 1.0 2 21 36 55 35 56 0.95

2 7 0.00097 0.11 13.4 2.6 1 23 64 87 64 87 0.95

3 7 0.00039 0.045 14.7 3.4 1 21 120 140 120 141 0.96

4 7 0.00021 0.024 15.5 0.7 2 21 195 214 194 215 0.94

5 7 0.0054 0.63 11.1 7.2 1 23 223 245 223 246 0.95

6 7 0.00012 0.014 16.3 0.2 2 21 347 366 346 367 0.95

7 7 1.7e-06 0.0002 22.1 2.7 1 23 375 398 375 398 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	5.4e-06	0.00063	20.5	1.0	2	21	36	55	35	56	0.95
2	7	0.00097	0.11	13.4	2.6	1	23	64	87	64	87	0.95
3	7	0.00039	0.045	14.7	3.4	1	21	120	140	120	141	0.96
4	7	0.00021	0.024	15.5	0.7	2	21	195	214	194	215	0.94
5	7	0.0054	0.63	11.1	7.2	1	23	223	245	223	246	0.95
6	7	0.00012	0.014	16.3	0.2	2	21	347	366	346	367	0.95
7	7	1.7e-06	0.0002	22.1	2.7	1	23	375	398	375	398	0.95

Sequence Information

Coding Sequence: ATGAGTGCGTTTCACACGTTCTTTTATTACATTCTAGGGCTCGCACGCGGATTTCGGAAGCCGGAAACCGCAATGGATACGTCGGTGTCATCGATATCGCCGCTGACATGCCCGCAATGCGGGCGAACGTACAAGATGAAACGCAACCTGAAGACCCACATGAAGTTCGAGTGCGGCGGCCAAAGAAACTTTATGTGCCACTTATGCCCGTCTAAGTACACACAGAACATCAGTCTGCGCCGTCATCTTTTACAGAGACACAACCTCTACTTGGCGCCGAAGTTTTCGGTCCCTAGGCAGCTGCAGTGGGTTGCCATGCGGGGCCTCACAGGTGAAATCCCCAAGAACAGTGTGGTCTTCAATTGTCATCAATGCGGCAGATCGTATCAAATGAGACACAACCTAGTAAAACATCTGAGATTCGAATGCGGTGGGCAGAAGCACTTCGCATGTTTTTACGAGAGCTTTCATCCCTCGGAAAATCCCGCGGTCTATGGCCGAAAAGCTCACGGTACACCCACGAAGATCGCTAGGGTCAGAACGAGCGCGAGGCATTCCGGCAACGCTGAAGATCAGACTCTCCAGTGTTCCGCCTGCGGGAAGAGGTACTCGCTAAAGCACAACTTGGCAAGACACGTGCGCTTCGAGTGCGGCGGTCAACGAAGATTCTCCTGCCACCTGTGCCCGAACAAGTACACGCAGAACGTCAGTCTGCGTAGGCACCTGACGCATCATCACAACGTCGTGGTACCCGTAAAGAAGAGGTATAACAACCCGAGGAAGATGTTTCTCGACATCCCGCTACATTTGTCAGAAATGTGGACGCGGCTACACGTTGCCCTGCAATCTGCGCAGGCACATGAAATGGGAGTGCGGCGGAAAACGCTATTTCCTGTGCTTCTACTGCAGGAAACGTTTTACTCAGAAAACGAGCCTGCAACGGCATTTGACGGGGGTGTGGCCTGGACGACCACTCAGGCGGGGCCGCCCCGGAAGTCACGACACGCGAATTATCTGAAGGACGAGGATCTCGCCCTCAAGTGTCCGCAATGTGGCCGGGGTTACAAGGTCAAGCCCAGTCTGTCGAAGCATTTGAGGTACGAGTGTGGCGGCCGCAGGAACTTTTGCTGTGAGCTATGTGGGCGCAGTTTCACGCAGAACGTCAGTCTGCGCCGTCACCTGATGCAGAGCCACAACTTTTATCAGCCGCCGAGGAAGCAGTGTATCCGGAAGATCGTCAAGTGA
Protein Sequence: MSAFHTFFYYILGLARGFRKPETAMDTSVSSISPLTCPQCGRTYKMKRNLKTHMKFECGGQRNFMCHLCPSKYTQNISLRRHLLQRHNLYLAPKFSVPRQLQWVAMRGLTGEIPKNSVVFNCHQCGRSYQMRHNLVKHLRFECGGQKHFACFYESFHPSENPAVYGRKAHGTPTKIARVRTSARHSGNAEDQTLQCSACGKRYSLKHNLARHVRFECGGQRRFSCHLCPNKYTQNVSLRRHLTHHHNVVVPVKKRYNNPRKMFLDIPLHLSEMWTRLHVALQSAQAHEMGVRRKTLFPVLLLQETFYSENEPATAFDGGVAWTTTQAGPPRKSRHANYLKDEDLALKCPQCGRGYKVKPSLSKHLRYECGGRRNFCCELCGRSFTQNVSLRRHLMQSHNFYQPPRKQCIRKIVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00129250;
90% Identity: iTF_00129250;
80% Identity: -