Aflo009138.1
Basic Information
- Insect
- Aphaenogaster floridana
- Gene Symbol
- -
- Assembly
- GCA_003063835.1
- Location
- NJRP01000054.1:1164806-1167567[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.5 2.9e+02 2.7 0.6 1 14 5 18 5 20 0.87 2 17 6.1 7.1e+02 1.5 0.3 1 8 105 112 105 114 0.90 3 17 0.12 14 6.9 0.8 1 23 376 398 376 398 0.95 4 17 0.13 15 6.7 1.0 1 23 406 429 406 429 0.91 5 17 2.3e-06 0.00027 21.7 1.2 1 23 435 457 435 457 0.99 6 17 6.2 7.1e+02 1.5 6.2 1 23 534 556 534 556 0.93 7 17 0.0019 0.22 12.5 0.4 1 23 563 586 563 586 0.92 8 17 0.00025 0.03 15.3 3.9 1 23 592 614 592 614 0.98 9 17 0.41 48 5.2 5.0 1 23 620 642 620 642 0.97 10 17 7.7e-06 0.0009 20.0 1.4 1 23 647 669 647 669 0.96 11 17 0.021 2.5 9.2 1.1 1 23 682 705 682 705 0.92 12 17 6.5e-05 0.0075 17.1 2.0 1 23 721 744 721 744 0.96 13 17 0.00035 0.04 14.8 0.7 1 23 753 776 753 776 0.98 14 17 0.0066 0.76 10.8 2.7 1 23 782 804 782 804 0.97 15 17 0.00024 0.027 15.4 3.4 1 23 810 832 810 832 0.98 16 17 0.023 2.7 9.1 2.4 1 23 838 861 838 861 0.97 17 17 0.024 2.8 9.1 0.4 3 23 868 888 866 888 0.97
Sequence Information
- Coding Sequence
- atggagAATACATTTCCATGCCGTCTATGTggtattaaatttgaatttaaggattcaaaatatatctttgatgaAGCGACTAATTTGGCTCAGATAATAAATGAGACTTTACCAATTAAGgTCTCGCAAGATGATGATTCCAAATATATATGCTTAGCCTGTTATTTTCAAGTTACCggtcattatgattttattcaaACTGTATTGGCACACTCGATGAACAGTGAGACAAAAATCGTCTCTTTGTTTGAAgtcaataaaaatgagaaactgGAAAGTGTGGTAATTTCTAAAATGCACAGTGACATGATATATAACTGTCCGAATTGCAACAAagatttaatgattttaataagcACTTCTGAAGATAATAATCATGAGTTTCAAATTTCATTGATTGTTGTGGATCAAATAGAAAAATCAATAGAAGATAATCAAACATCTGAAGATATAATAGAGCTTGTTGATGTCTGTACACACAAATCAAGTACAGAAGATGAATTACATGAACTGTCATTCAATCATAATATCATCAATGAGGATACGACAAATGATAACAAACGAGATATCAATCTGATACATGAAAACTCGCAAAAAGATACTAATCATACGAATTCTCATATTACATTGcaaaaaactaatatattacaTGAATCAAATAAAGGTACAAAGAGAAAGTTTCAAGAAAATGTTTCTACTAAAACATCTGTTAATCCAAATAAGTTTCTAAAACTAGAagtaaaagatataaagaaacaAGAACCCGATGAATTATACAGTGATTCTGATAGATCAAGCATGGCTGGCTTAATAAACAATGGCATGGAATGTCTCAGTGAAGAAGAAAATAGTACGACGGAAAGGAAGCTCCTCAACAAGAATCTTACTAAATCGCAAAGATTAGAAACAAAATTAGATGCAAGGGAATcaaacaatgataatgatgagcCAAATGTAGCTGACTTGATAACATTCCAGCTAGAAAATGATGAATCGGTGATAGAATGCATCAGTGGTGTTGTAGAAGTTAGAGAAGATGATACAACGGATATGACGAAAACAGAAATAGAATGCATCAAACAGGATGATACAAATGACATCAACATTCCAAAAAGTAATATAAGACATATATGCGATTTGTGTGGAGCTCGTTATATTTCACAAGAAAAGTACGAATTTCACATGGAGAgacataaattaaacaaaatagacaaatatatttgtataatatgcgacaaaaaaactaaaaatgaaaacttGTTGTGGGATCACTACCTCCATACGCACAAGAGCCCAATGCGATATACTTGCTTGGACTGCGACAGAATATTCACGAAAAAACCAAATTTGAATGAACATCAGAAAAGACACATACATTCTGGTTACAAAATGATGCTAGATGTTGAAATGGATACGGTTAACGATCAGACGCAGAAGGTTATTACAAAACAAAAGCAAAAATGCACTGTTTGCAGAAAAGTAATAAAGGATATAGATCCTGATGCTATCAACGATCTAGCAACATGCGCCTCCTGCGAAGACTCCAGTGCATGTCTAATAGTCGACGGGGAAGCAGCAAAAGTAATTTCGCAGCGCCAATATCACTGTTTAAAGTGCCGTAAGCATTTTATGCGCCAGGAGAGACTTGAGTTCCACGAGATGCGACATAATGAGAATATGGAGGAGTTTATCTGCAGCACATGCGGCAAGGAGTTCAGTGGGGAAAACTCTTTGTACGAACATTATCTCTTCGTGCACAAGGGGGCTAGACCACATGTTTGCGAAATATGCGGCAAGTCGTTTCAGCTGAAGGCGCGATTGAAGGAACACCATCGGAAGCATACGGGTGAGAAGCCCTATCAATGTGAAATATGCGGTCTACGTTGCATGACTACGCATGCATTGAAATTCCACAAGAAGTCTCATTTATCCCTTCGCCATGCATGTGACCTATGTGGCAAATCATTCATCAAGAAGCAGAACTTGAATGAACATCTGGAGAAGCACTGGAAGAAAGACAAGAACATATCACTTCCGCAAATATTTACGTGTTCCGTGTGCAAATACGAATTGCCGACTTTCCGCATGCTGAAGCATCACATGGTTGGGATCCATAAGCTCGACCGTCAGGACCCcttaataatgaaagaaaaaccaTTGTACGAATGCGATGAGTGTCAAGAGAAGTTCAAACATCAAATGTCGCTCAAAGCACACAAGGAGAAGGTGCACGAGGGCAAAATTATGCCTCGTATATTTCAGTGCGATGTATGCAAAGCTGTATACAAGGTCAAGCAGAAGCTAATAAATCACATTAAGAGCAAGCACAGCGACGAGAAACGATACAAATGTGCGCAGTGCAAAATGAGATTCACGGATATTAAAACCCTGTATCACCACGTTTTACTACACACTGGTAGGAAACCGTTCACCTGTGAGTATTGCAACACGAGTTTCAGGCGACGAGATTCCAGGGACATTCATCGCCGTAAACACACGAACGATCGACCTTACCAATGCACAGATTGCAACAGCTCGTTCGGTAGCTACACCAGTCGCTCGAACCATCGCAAGAAGGTACATGGGGATAACGAGACCGACTGTCCAGACTGCGGAGAGAAATGTGGCGATATGCAGGAAATCAGAATTCACCTGAATAAGCATCTTGGCGAAAAATTGAGCGAATTAGAATCCACGTAA
- Protein Sequence
- MENTFPCRLCGIKFEFKDSKYIFDEATNLAQIINETLPIKVSQDDDSKYICLACYFQVTGHYDFIQTVLAHSMNSETKIVSLFEVNKNEKLESVVISKMHSDMIYNCPNCNKDLMILISTSEDNNHEFQISLIVVDQIEKSIEDNQTSEDIIELVDVCTHKSSTEDELHELSFNHNIINEDTTNDNKRDINLIHENSQKDTNHTNSHITLQKTNILHESNKGTKRKFQENVSTKTSVNPNKFLKLEVKDIKKQEPDELYSDSDRSSMAGLINNGMECLSEEENSTTERKLLNKNLTKSQRLETKLDARESNNDNDEPNVADLITFQLENDESVIECISGVVEVREDDTTDMTKTEIECIKQDDTNDINIPKSNIRHICDLCGARYISQEKYEFHMERHKLNKIDKYICIICDKKTKNENLLWDHYLHTHKSPMRYTCLDCDRIFTKKPNLNEHQKRHIHSGYKMMLDVEMDTVNDQTQKVITKQKQKCTVCRKVIKDIDPDAINDLATCASCEDSSACLIVDGEAAKVISQRQYHCLKCRKHFMRQERLEFHEMRHNENMEEFICSTCGKEFSGENSLYEHYLFVHKGARPHVCEICGKSFQLKARLKEHHRKHTGEKPYQCEICGLRCMTTHALKFHKKSHLSLRHACDLCGKSFIKKQNLNEHLEKHWKKDKNISLPQIFTCSVCKYELPTFRMLKHHMVGIHKLDRQDPLIMKEKPLYECDECQEKFKHQMSLKAHKEKVHEGKIMPRIFQCDVCKAVYKVKQKLINHIKSKHSDEKRYKCAQCKMRFTDIKTLYHHVLLHTGRKPFTCEYCNTSFRRRDSRDIHRRKHTNDRPYQCTDCNSSFGSYTSRSNHRKKVHGDNETDCPDCGEKCGDMQEIRIHLNKHLGEKLSELEST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00127706;
- 90% Identity
- iTF_00126220;
- 80% Identity
- -