Basic Information

Insect: Aphaenogaster floridana
Gene Symbol: salm
Assembly: GCA_003063835.1
Location: NJRP01000044.1:47025-61322[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.2e-05 0.0025 18.6 1.0 1 23 379 401 379 401 0.98

2 9 8.9e-06 0.001 19.8 2.1 1 23 407 429 407 429 0.98

3 9 4 4.7e+02 2.0 3.3 3 23 794 814 793 814 0.92

4 9 3.9e-08 4.5e-06 27.3 0.6 1 23 820 842 820 842 0.97

5 9 5.4e-05 0.0063 17.4 2.6 1 23 852 874 852 874 0.98

6 9 0.011 1.3 10.1 3.2 2 23 1166 1187 1165 1187 0.97

7 9 0.028 3.2 8.8 1.0 1 14 1193 1206 1193 1207 0.92

8 9 5.2e-07 6.1e-05 23.7 2.1 3 23 1421 1441 1419 1441 0.96

9 9 1.8e-07 2.1e-05 25.2 0.9 1 23 1447 1469 1447 1469 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.2e-05	0.0025	18.6	1.0	1	23	379	401	379	401	0.98
2	9	8.9e-06	0.001	19.8	2.1	1	23	407	429	407	429	0.98
3	9	4	4.7e+02	2.0	3.3	3	23	794	814	793	814	0.92
4	9	3.9e-08	4.5e-06	27.3	0.6	1	23	820	842	820	842	0.97
5	9	5.4e-05	0.0063	17.4	2.6	1	23	852	874	852	874	0.98
6	9	0.011	1.3	10.1	3.2	2	23	1166	1187	1165	1187	0.97
7	9	0.028	3.2	8.8	1.0	1	14	1193	1206	1193	1207	0.92
8	9	5.2e-07	6.1e-05	23.7	2.1	3	23	1421	1441	1419	1441	0.96
9	9	1.8e-07	2.1e-05	25.2	0.9	1	23	1447	1469	1447	1469	0.98

Sequence Information

Coding Sequence: ATGACCGAACAAAACGAAGATGAAAAACCCAACAGAACACACGGTTGTATGAAATGGCGCATAATGGATCCATTGCTACGCATTCACAGACTGAAGAGGATCAAGTTACGACATCGACAAATACCTAgaGAAGAAAATGATTTTACATCAGACGGTGAAGAGAGcggtggtggaggaggaggtggcGAGGAAGCCGTCGATCTCACAGCGACGAGATCTCATCAGGGCGACGATGATCCTATGGAAGAGGATGAGGAAGAAGGTATCGATGAGCAAGACGAGCAGGATGAGGACGAGGAGGGCTCGCGCAAACAGATTCATCATCGACAGGACGCGGAGAACAACAATAACTTTGTGGAGAGCGGCCTGCCTACCGCTATGTTGCCACCAGCTGGAACTAGTCATGTCACCCTTGAAGCCCTTCAGAATACAAAAGTGGCGGTCGCCCAGTTCGCTGCCACTGCCCTCACTGGGGCAGACAGCGAAGCGGCGCTACAAGATCTGGCATTTCTGGAAAACACGCTGTGCACCCTTCAGAATCAACAGGTATTACAATTACAGCTGATTCGACAACTTCAGCAACAATTATTGATCACTCATGGGCAATCGGTAATGCAATCGGCGGCGACGGAGTCAACTGATAGCAAAGAGGCTTCGTCGTCTCCTATTATTCATCCGAAACCATTGTCAAGTCTCGCGTCACCTCCTTCTTCTCGTCCACCGAGTCATCATCAGCAAACATCACCGGCGCCGCTGACGCCGAATTTGCTTCAGGAACGACCCACCTCGACGAGCAGCGCCTCTCCTTTGAATCTACCGCTATCTTCGTCCAGCGCGACGTCAACTGTCATCACAACCACCAGCAGCCAAATGCCGTTGCCGCATCAAATGCCGCCACTTTGCTCGATAAGCGCTTCCCTCGCTTCATCGATCATAACGAACAACGATCCGCCGCCGCTTCACGAGCCAAACACTCTGGACATTCTTCAAAAGCGTACCCAGGAAGTATTGGATAACGCGAGTCAAGGACTAGCCAACAATTTGGCTGACGAGCTCGCATTTAGAGGCAAGGGCTCGCGACTATCTCCTTACGATTCGAAATCAAGCGGTGGTCGCGGCGAGCCCTTCTTCAAGCATCGATGTCGCTTCTGTGGCAAAGTCTTCGGTAGCGACTCGGCGCTACAGATCCACATACGATCCCACACAGGTGAGCGACCCTTTAAGTGCAACGTATGTGGCAGTCGGTTCACGACCAAGGGCAACCTGAAGGTCCACTTCCAAAGGCACACGGCCAAATTTCCACATGTTAAGATGAATCCGAATCCCGTTCCAGAACATTTAGATAAATACCACCCACCCCTCTTGCAGCAAATCGCTTCCGGGCAGAGACCGATGCCgtctccgccgccgccgccaccaccatcCTCTCATCACCCTTCGTTTCATCCGGCAACAACGCACGGTTTCCTCCCACCACAACCGCCCATACCTCTGAGTCTCACCTTATCCAATATGACGCCCCTTTATCGATCTCCAATTATTAATCACCGGGACGATCAAGATATGCCGGAGAATCTTAGTAAACCCGTAACCACCGCTCCACAGACGTCTCCCACTTCTCCCACTGCCATATTGAATTCTCGTCATTCCTTCCACGACAATCTCCATCAACAACATCAAAAGCAGCAACTTGAGCAGAGAGAAGAGATAAAACTCGAACAGAGATCGCCCGGACAGGAGCAGTACCAACAACGACCGATGAGCCGGGAAGGCGCCGAGCGAATAACACCGAAGAGAGAACCCGAAGAGGCGGATGAAGCCGCAGAGGAAGAGAGCGAAGATTTTGAAGAGACCACGAGACGATACCTCAACTCACCCCAATCCGTGAATCCACTATCCCAGCCGCAAACGTACGAGGATTGTAGTATGGACAGTAAGATCAGTGGACGTTTAGAGGGCGACGGAGAGATGGAAGTGGACGAAGAAACAGAGGAGCAACCTGAAAACCTCTCAGGCAGAGGTACGATCAATCGTTTGCCTCAACCGATCGTGGCATATCCAGGAGCTTCGCCGGCCAGTAGTAGTGCGAGTAGCGGTAGTCTGCAGACATCTTTCGCCGGAATCCTGTTTCCAGGTCCTCCGACTCATCACCAAATTTCTCACCTTCCTGTTTCTACACAGGCAGGACCAATCACGACATCCGGAAATGAAATGATTGATCCAGCCAAGGATCCAGCGATTTATTCGACATTACTACCGCGGCCTGGCAGCAATGACAATTCCTGGGAGAGCTTGATTGAAATAACGAAAACTTCAGAGACGTCCAAACTACAACAACTAGTCGACAATATCGAGCACAAACTGAGCGATCCTAATCAGTGCATCGTTTGCCACAGAGTACTCTCATGCAAGAGCGCGTTACTAATGCATTATCGTACTCATACCGGTGAACGTCCTTTCAAGTGTAAAATTTGCGGTCGCGCCTTCACGACGAAGGGTAATTTGAAAACTCACATGGGGGTGCACAGAGCTAAACCACCACTGAGAGTATTGCACCAGTGTCCCGTGTGTCACAAGAAATTTACGAACGCTCTCGTACTGCAACAGCACATACGTCTTCATACTGGGGAACCCACCGATCTCAGCCCGGAACAGATCCAAGCTGCAGAAGTAAATGAGTTCCCGCCCGGTTATCATCCCCTGGCGTCTTTTCTCCCGCAAGGATTTCCGTCGATACATCCAACCAGCGCCGGCTTTTCCTTAGGATTCCCTCCATCCAGACAAACGGCCATCGAACAACAATCGCAGGAGAGTGACGTCGAAGCGAAAGAGGAGTCTCAACACCAACGACAGAGATTTATGGAGGAGCATAGCGAGGAGATGGAAGATCAGGAGGACGAGGAGCAAGATCACAGAGAGGACGACGAGAGGTGCGAATTGAATCCCGATAGGCGTAGTGTCGAAGTCGAAGAGGAGCAGGACCACGAAAGCGAAGATACGACCGAACACAAAGACGTAACGCTTCCTATATTTTCGACTTCGTTGGCGGCGCTCGAGAATCAAGTAAGGACCATCACGACGACGGCCACGACCACGAACGTGGCCAGATCGCCATCCTTCCATCGGTATAACGGTAGCGAGAAAAGTACTAGCCCACCGACCTCCGGAGCTCCACTTGACCTAACGCCCCGTGCTTCGTCCACGCCAGCGTCGGTAGCTTCAGCATCGCCGACACCACCACCCCCGCCACATCATCCACCAAATCCCTTCGGCATGTTTGCGGGACTACTGCAAGCGGTCTCGTCCGGTCCTACCACCAGCACGATAGGCACGTCGAACATAAACAGCATCACCTCGATGAGCGCCGTCAACCCGGGAAGCGGGCCCGGCAGCGGACCACTAGCCTCGCTGACCACTTCGGCCGTACTAGCCGCGTCATCAACCTACAATCCGCTTGGCCTAGCTGTTGGAGGCCCAGCAGTACGTGGCAACACTACATGTAAATTCTGCTACAAGACATTCGCGTGCCAATCTGCATTGGAGATTCATTACCGGAGTCATACGAAGGAGCGACCTTTCAAATGCACCATATGCGATCGAGGTTTTTCTACGAAgAACGATGATTCCGGTCAGCAAGTATGTTCCTGCGCGGACCAACCCTTCGCCGCGAAGGGTCCGATCCTCCCACAACCCAATCCCCAATATCGCTCGTACCCGGCGAGACCGGCCGCCGGAAATAGTGAGAAACCGAAACGCAGGCGGCGGCGGCCTGAGGAACGGAAGAACCGGGGGCGGACAGGAACAGGAGGGGGGCGAAGGCTGACGTCTGTTTATCCTGCCGTCCGCCTGCCCCCGCTGATGCCACCCGCCCTCGGACTTCTACCCTCGGACCACGTCTTCCTGGGTAATATGAAGCAGCATATGTTGACTCACAAGATTCGCGATATGCCGCCACATCTGTTCAGCGATCCTAAGcatcaacagcagcagcagcaacagcagcaacaacagcagcagcaacaacaacaacagcagcaacagcagcaacaacagcagctacagcaacagcaacaggaTCAGGAGACTTCCAGAAGTCCAATGTGCGTCGACGATTCGAGCCTACCGCCCCCACCTCCACCACCTCCACCACCCCCGCCGATGCCACCGACGTCTATCGACTCCACGATACCAATGAAGAGATCGCCGGAAGGAGATCTGCCGGCACCGAAAAGACCAGCTAGCGTGCCGAGCAAGCATTTGTGCCAGATTTGCAATAAGAATTTCTCTTCGTCTTCGGCGCTCCAGATCCATATGAGAACTCACACTGGCGACAAACCGTTCCGATGCACTGTCTGCCAGAAGGCGTTCACCACCAAAGGCAACCTCAAGGTGCATATGGGTACTCACATGTTCACCAACGGAACATCGCGTCGAGGTCGACGGATGTCATTGGATATACCTCCCCTGCCAATTACACCCAAGGACTCGGAGTTTCTGCAACGACGACCGGATCTCTTTTACCCATATCTTCCCGCGCCATTCCTTAACGGCGTCCAGCAGAAGCTGAACGAGATTTCGGTGATTCAAAGTAGCAACGGGTTACCGCCCCATTCCTTGAGCGCGGGCAAATACGCGGCGAGCCTGTTCGGCTCGGTGTACGGTGCCGGCGGGGGTGGCTTCTCCCTGGACAAACAACCGATGGGGCCGACCAGTAACGGGCCCCTAGTGGACGGCAAGTCCGCGATACCCTCGGGATCCATGCTCTTCCAGACACCGTCGCCCTCGCACTCGCCCGGCGCGTCGTCCAACGGCGGTAATCAGACGTCCGCCAGCGTGTCTTGGACCGGCGATACTCTTCAGCACCATTTCGACCGGGAAACACCGAGCAGAAACGAGAACGATGCCACACCGCCCACAGCGCGGCTACCACCGCCACCGGCGAGGGGAGAGGGATTAGCCGCGTGA
Protein Sequence: MTEQNEDEKPNRTHGCMKWRIMDPLLRIHRLKRIKLRHRQIPREENDFTSDGEESGGGGGGGEEAVDLTATRSHQGDDDPMEEDEEEGIDEQDEQDEDEEGSRKQIHHRQDAENNNNFVESGLPTAMLPPAGTSHVTLEALQNTKVAVAQFAATALTGADSEAALQDLAFLENTLCTLQNQQVLQLQLIRQLQQQLLITHGQSVMQSAATESTDSKEASSSPIIHPKPLSSLASPPSSRPPSHHQQTSPAPLTPNLLQERPTSTSSASPLNLPLSSSSATSTVITTTSSQMPLPHQMPPLCSISASLASSIITNNDPPPLHEPNTLDILQKRTQEVLDNASQGLANNLADELAFRGKGSRLSPYDSKSSGGRGEPFFKHRCRFCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLQQIASGQRPMPSPPPPPPPSSHHPSFHPATTHGFLPPQPPIPLSLTLSNMTPLYRSPIINHRDDQDMPENLSKPVTTAPQTSPTSPTAILNSRHSFHDNLHQQHQKQQLEQREEIKLEQRSPGQEQYQQRPMSREGAERITPKREPEEADEAAEEESEDFEETTRRYLNSPQSVNPLSQPQTYEDCSMDSKISGRLEGDGEMEVDEETEEQPENLSGRGTINRLPQPIVAYPGASPASSSASSGSLQTSFAGILFPGPPTHHQISHLPVSTQAGPITTSGNEMIDPAKDPAIYSTLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLSDPNQCIVCHRVLSCKSALLMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLSPEQIQAAEVNEFPPGYHPLASFLPQGFPSIHPTSAGFSLGFPPSRQTAIEQQSQESDVEAKEESQHQRQRFMEEHSEEMEDQEDEEQDHREDDERCELNPDRRSVEVEEEQDHESEDTTEHKDVTLPIFSTSLAALENQVRTITTTATTTNVARSPSFHRYNGSEKSTSPPTSGAPLDLTPRASSTPASVASASPTPPPPPHHPPNPFGMFAGLLQAVSSGPTTSTIGTSNINSITSMSAVNPGSGPGSGPLASLTTSAVLAASSTYNPLGLAVGGPAVRGNTTCKFCYKTFACQSALEIHYRSHTKERPFKCTICDRGFSTKNDDSGQQVCSCADQPFAAKGPILPQPNPQYRSYPARPAAGNSEKPKRRRRRPEERKNRGRTGTGGGRRLTSVYPAVRLPPLMPPALGLLPSDHVFLGNMKQHMLTHKIRDMPPHLFSDPKHQQQQQQQQQQQQQQQQQQQQQQQQQQLQQQQQDQETSRSPMCVDDSSLPPPPPPPPPPPPMPPTSIDSTIPMKRSPEGDLPAPKRPASVPSKHLCQICNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMFTNGTSRRGRRMSLDIPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEISVIQSSNGLPPHSLSAGKYAASLFGSVYGAGGGGFSLDKQPMGPTSNGPLVDGKSAIPSGSMLFQTPSPSHSPGASSNGGNQTSASVSWTGDTLQHHFDRETPSRNENDATPPTARLPPPPARGEGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00417805;
90% Identity: iTF_01421750;
80% Identity: -