Basic Information

Insect: Aphaenogaster floridana
Gene Symbol: -
Assembly: GCA_003063835.1
Location: NJRP01000364.1:181614-184786[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.032 3.7 8.6 0.2 3 23 446 468 445 468 0.94

2 10 0.0019 0.22 12.5 1.4 1 23 474 498 474 498 0.98

3 10 0.00018 0.021 15.8 0.2 1 23 504 528 504 528 0.97

4 10 0.00022 0.025 15.5 0.1 3 23 536 558 534 558 0.93

5 10 5.5e-05 0.0063 17.4 1.7 1 23 565 589 565 589 0.97

6 10 8.3e-05 0.0096 16.8 0.6 2 23 597 620 596 620 0.95

7 10 4e-06 0.00046 20.9 2.0 1 23 626 650 626 650 0.98

8 10 6.1e-06 0.0007 20.4 0.5 1 23 656 680 656 680 0.97

9 10 0.00027 0.032 15.2 1.2 1 23 686 708 686 708 0.99

10 10 0.0068 0.79 10.8 0.2 1 23 786 811 786 811 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.032	3.7	8.6	0.2	3	23	446	468	445	468	0.94
2	10	0.0019	0.22	12.5	1.4	1	23	474	498	474	498	0.98
3	10	0.00018	0.021	15.8	0.2	1	23	504	528	504	528	0.97
4	10	0.00022	0.025	15.5	0.1	3	23	536	558	534	558	0.93
5	10	5.5e-05	0.0063	17.4	1.7	1	23	565	589	565	589	0.97
6	10	8.3e-05	0.0096	16.8	0.6	2	23	597	620	596	620	0.95
7	10	4e-06	0.00046	20.9	2.0	1	23	626	650	626	650	0.98
8	10	6.1e-06	0.0007	20.4	0.5	1	23	656	680	656	680	0.97
9	10	0.00027	0.032	15.2	1.2	1	23	686	708	686	708	0.99
10	10	0.0068	0.79	10.8	0.2	1	23	786	811	786	811	0.97

Sequence Information

Coding Sequence: ATGTCTTGCAGAGGAGCCGCCGCTTGCACGTCGAGACGACACAGTCGCGAAAGAATCAGCTCCGAGGGCGAGGGAGCGGAATGCGCGCCCACCGATGCGTTTTTTGCCTCATCAAGGACAGACGAAGTCGGTAAGAAGGACCGAAAAACCAGGAGAAATGAGAGTTGGCACCAAACGCCAACTGGGAAAGGTGTTGATGTTGAGACGGTAGCCGACTTTGAGAAATGGCTCAAGATGCGCAGCACGGAGCCACCGGTGCCATCGAGCATGGACTTGGACACAGCCAAGGTAGTAGAAGGTGTAGACCGATATCTAGGCGAAGAGGTGCTGTCACACGGCTGCTTTCTGAGCAAAGATCCATACGGCCTGTCTATCGATATCGATCTGGCAGATGCCAAGAAGCTCAACCTGTCATCAGGCTACGATCCGATACTGCAGGATCTGACGCACAGCGAGAATCGGCTATTGGAACCACCGTGCGAGAAAGTCGTCGACGAGTTTATGCTACCGGAATTCCAACTGGATCATCTGGATCCACTAGCAGCGCTCACACCAGATGATATGATGGTGGCCGGTGAGATTTTGCCATCTGCGAGTAATCAACCAACACTAAACATAGAGAATCAAGATGTCGAACAAAACGCTCCAAAAACAGGAGTTCCAGAACAGACCAATGAGACACTCTGCGAGAAATCCACGCAGGTTACCCTCAATCAGCTACCGGTGAATTTGGTTGTGAACGAGATTGAAGATACAAAGACAGAACAGGAAGCTATAGTACAACCTTCAGGAAGTTCCTCTGAGCTCTTCATCGGAACCTTATCGTCAGTGGAGGAGAGCACGTCGAATACCATGACGAATTCCATAGAAATAGACACACGGGGCATGGTAATAGAACAATTAAAGAAGACGAAACTCGAGCCTCGTATCATTAAGAAACGTCGACAGATGACAGAGCAATTGGAGAAACTCGACAAACATATCAATGGCAAGAGCTTTGCCGTTGATGCAGATTCGCAGGATGGCATGATGGCTGTGGTCGCTATATCTACTGACAAGATCTCCAACATGACACAGATCGTTATCAATACTGGCACAGAGAAACAGATCTATCAGGGCAAGACCTCGGAATTGATCGAGGCAACAGGCAATTTTCCAAAATTGCCCAAAATAGATACTTCTGCCGCGATTTGGAATGGTACGGTAGAGTATGATACCGATAGTAATCCGAATAGTCAATATGAAATTGTTATATCCAATGCATTGGAAGAATTAGGCATCACCGATGACAGTCTGCAGCCCTTATGTGCCACCGAACACGACAAAGTATGGCTCTGCCCACGAGATGGCTGCAACAGACAATTCGGCAGATTGTATACTCTGAAGGGTCATTTGTTAGCCCACTATGGAGTTAGACCGTTTAAGtGCGACTTCGAGGGCTGCACTTGGGCCTTTTATTCCGAATTCAAGCTCAAGAGACACAAGGAAACACATCTAAAGCGCAAGGATTACGTGTGCGAGGTGGAAGGCTGCAATCGTCGTTTCACTACTGTCTATAATCTGTGGAGCCACGCAAAACTGCACAGTCGTCCTAATCGGATCGTTTGTCAGGTGCCAGACTGTGATGAAAAGTTTCAGACAAAACGAGCGTTGGAACTACACATGAAGTCGCACGACCAGCGTCATGCACCTTACGTGTGTCAGCACGAAGGTTGCGGCAAACGTTACTACAGCAGCAATGCATTGACATCACATCAGCGATCACATAGCTATAAAGAAGTGGACATCAAGTGCTCATGGCCGGGCTGCGGCAAGATTTTCGATAAGCCATGCCGACTCAAGGCCCACATGCGTTCTCATACCGGCTACAAACCTTATCCTTGTACTTTCCAGGACTGCAAGTGGGCCTTTTCATCATCTAGCAAACTTAAGCGCCATCAGAAGAAGCACACAAACGAGCGCAAATTTGTATGCGACGTGCCAGAATGTGGCAAGGCGTTTATGCGCTCGGAACACTTGAAGGAACACCGACTGACGCACACGGAAGGTCGCTTCTTCCAGTGTTTTGTGTGTACTGCCCGATTCTCCGCCAAGAGCAGTTTGTACGTGCACATCAAGAAACATCAGCAGACCAAACCAGATTTAAATGTAGCTAGTGATATGTCCGAGTGCACTTCCGGTGATCAGAAACGCACGAGAACGAGAGAATCTCATTGCTCGCGAGTGAAGCCGATCAAGCCGAAGCGATGGAACACAGAACTGATGAATGCTGCTGAGACTATCGCGGAGGAAAACGGCGTCGAGAAGCAGGATGCCAACGTATGTTCCCAGGATGAAGATCAAATGGAATGGCTATATCGTTGCCCGATAGATATATGCGGGCATTTGATCAGCAGCGAGACGAGTCTTCGCGAGCACATGTTAAAAGCACACAGCATACATTGTGACGATTTGCTGACTAAACCGTCTTCGGACGATGCCGATATAGATTACGTTTTATACACCGTGCATAGCTCGCCCCCAAGTTCACCAACTGCCGTCGAGGAGGAACAGATGGTCATGGTGACTCCATGCGATGCCGTCATCCTTGATACTTCTTCACCAAGAACGGATCATTGTCTGCCGGAACCGGAACCGCCACCTTTCGACACCTTGTTAAAGAGCTCCGAAACGTTCCAAAACGACACGCGAACTGACAAGCGGATCGACAATGACACTGTACCGGTGAAGGAGCAGGGCTCGGCAAGGACAGATTTAACGTATTCCGACTGGTCTAAACTGAAAAAGAACAGTCCGTTGATGGATTCGGTAGTGACGGAAACGTCGGACGTTGTACTGGGCGCGAGTGGTGATCTAAGCGAGAGTTTGTTGGTCACGGAAGAACTGCCTTCGATGTACTATCAGGATGATGTGGCAGGTACGGAATACCAGGTGTTGTTATTAGACTCAAGTCCGCTCGAGAGTGCCAATAATTTGCGCGGTCTCGAATGA
Protein Sequence: MSCRGAAACTSRRHSRERISSEGEGAECAPTDAFFASSRTDEVGKKDRKTRRNESWHQTPTGKGVDVETVADFEKWLKMRSTEPPVPSSMDLDTAKVVEGVDRYLGEEVLSHGCFLSKDPYGLSIDIDLADAKKLNLSSGYDPILQDLTHSENRLLEPPCEKVVDEFMLPEFQLDHLDPLAALTPDDMMVAGEILPSASNQPTLNIENQDVEQNAPKTGVPEQTNETLCEKSTQVTLNQLPVNLVVNEIEDTKTEQEAIVQPSGSSSELFIGTLSSVEESTSNTMTNSIEIDTRGMVIEQLKKTKLEPRIIKKRRQMTEQLEKLDKHINGKSFAVDADSQDGMMAVVAISTDKISNMTQIVINTGTEKQIYQGKTSELIEATGNFPKLPKIDTSAAIWNGTVEYDTDSNPNSQYEIVISNALEELGITDDSLQPLCATEHDKVWLCPRDGCNRQFGRLYTLKGHLLAHYGVRPFKCDFEGCTWAFYSEFKLKRHKETHLKRKDYVCEVEGCNRRFTTVYNLWSHAKLHSRPNRIVCQVPDCDEKFQTKRALELHMKSHDQRHAPYVCQHEGCGKRYYSSNALTSHQRSHSYKEVDIKCSWPGCGKIFDKPCRLKAHMRSHTGYKPYPCTFQDCKWAFSSSSKLKRHQKKHTNERKFVCDVPECGKAFMRSEHLKEHRLTHTEGRFFQCFVCTARFSAKSSLYVHIKKHQQTKPDLNVASDMSECTSGDQKRTRTRESHCSRVKPIKPKRWNTELMNAAETIAEENGVEKQDANVCSQDEDQMEWLYRCPIDICGHLISSETSLREHMLKAHSIHCDDLLTKPSSDDADIDYVLYTVHSSPPSSPTAVEEEQMVMVTPCDAVILDTSSPRTDHCLPEPEPPPFDTLLKSSETFQNDTRTDKRIDNDTVPVKEQGSARTDLTYSDWSKLKKNSPLMDSVVTETSDVVLGASGDLSESLLVTEELPSMYYQDDVAGTEYQVLLLDSSPLESANNLRGLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00128451;
90% Identity: iTF_00128451;
80% Identity: -