Aflo012049.1
Basic Information
- Insect
- Aphaenogaster floridana
- Gene Symbol
- ZBTB41
- Assembly
- GCA_003063835.1
- Location
- NJRP01000214.1:353580-356415[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.16 19 6.5 0.2 2 23 139 161 138 161 0.93 2 15 0.022 2.5 9.2 0.3 2 23 166 188 165 188 0.91 3 15 0.084 9.8 7.3 2.1 3 23 374 394 372 394 0.95 4 15 0.093 11 7.2 3.6 2 23 400 422 399 422 0.95 5 15 0.0014 0.16 13.0 0.7 1 19 432 450 432 452 0.92 6 15 0.012 1.4 10.0 6.7 3 23 463 483 462 483 0.97 7 15 0.00016 0.018 15.9 0.2 1 23 496 518 496 518 0.98 8 15 4.4e-05 0.0051 17.7 0.8 1 23 526 549 526 549 0.97 9 15 0.00042 0.048 14.6 3.0 1 23 555 577 555 577 0.98 10 15 0.013 1.5 9.9 0.5 1 23 580 603 580 603 0.95 11 15 0.00032 0.037 14.9 0.9 1 23 617 639 617 639 0.98 12 15 0.00042 0.049 14.6 3.3 1 23 645 667 645 667 0.98 13 15 1.3e-07 1.5e-05 25.6 3.6 1 23 672 694 672 694 0.98 14 15 1.1e-06 0.00013 22.7 3.0 1 23 702 724 702 724 0.99 15 15 7.7e-06 0.00089 20.0 1.9 1 23 730 752 730 752 0.98
Sequence Information
- Coding Sequence
- ATGGATACCAGAGTAGACTATTCCGATAAGATTGTAGATATTTCCCATGAGAAATTCGAAATATGTCGTTTGTGTGGAGAAAAGTCTTTGCAGTATGTTCCAATATTTGAAGACAAAGATAACTTTATTCCcgaaaaaataagtaaatgttTACCGATTATtATTTTTCCAAACGATAATTTACCTTCTAATGTGTGCAGGCGTTgcctaaattatttaaatattagttgTAAGTTGATTCTTACTGCAGTTGAAGTTGATAGGCGTCTACGAATTCAATTAGATCAAACGCGAGAAGATGCTATCTTTATAAACAAAGATGTGGCACCTTATGAAGAACCTAAAATATCTGAACCAATAATTAGACCATTGTTATTGAAGGAACTGAAGAGGCGAGCTATTATCGGCCCGATTGAATGTGATCTATGCGACTTGAATTTTCAAGATGTAAATACATTTGATAACCATATGGAACAGTTCCATTTTTTAAAGTGGAGATGTAGTCTGTGCGACAATAGCTTTTATGAATCTAATGAGCTGATAACACACAAGGCATTGAGGCATAGTGGTAATATTGTAATATGCAATAGCTGTCAACACACTGATCAGAATAATAAACAGGAGATTACAGATAAAAGTATTCAGAATGATCAGAATAATAAGAAGATTAAAGGTAAGAATATCCAGAATGATCAGATTAATGCACAAGAGATTATGGATGAGAAGAATGTCCAGAAAGATCCAAATAAACAAGAGTTTATAGATAAGAAGAACGTTCAGAATTATCAGAATAATACACGGGAGATTATAGAAAAGACTATTCAGAATGATCAGAAAACAGAGCAAgagattattgataaaaatagttaCGAAAAGGAAATTgttacttttacaaaaaatgacGAAATGGCAGTATCAGTTGACTTAGCAATGGATATTGCAAAAGATATTGTTGAAATGGATATTGTTGAAACGGAAAATGAAGACGATTCAATGCAGGCTTTGTTAGAACAAACTGATGACAGTTCTGATTCAGAGACAGATAAaatcatagaaaaatataaaagatttttggAACAACTCAAGGAAAAAGAAttgttgcaaaaagaaaaattgttttgtgaTTCTTGCAAGATCCGCTTTGGGGACGAGCGACATTTTAAAGCCCATAATAAGATACACGAGGAAAGAGCTGTGACTTGTACCAAGTGCTCTACAGAATGCTCATCTACATACGATCTATTTCTTCATAAACGTGAAAAGCACAATATGTACAAAACAGTACAATTAAAGTATATGTGTAACAAATGTGGGAAATTCTTTACACATAGCTGGCGTTGGGAGGCTCACAATGAAGATGAGTGTTCCAGGATGATGAAAAGGTGTTGCAAATATTGCAACGCAGTATTCCAGACACATCTCAAACTGACACGTCACTTAAGgAAACACAAGTGGGAGATGTTCAATGATCCGACTGTGACTGTATATAAATGCGTTGCCTGCCCCAAAATATTCGTCGACAAAGAACTTTACGAAAAACAtagaaatGTACATGATCCAGAATGTTGGGATAAATTTCGGTGTACCACGTGCGATCGGCCCTTCACGGACAAGATTCGATTACGAGATCATCAGTTGTCCGTTCATCAGAATGTTAAGCCTTATGACTGCAATATCTGTGGACGTTCTTTCTTGCGCTTGTACGAAATGaAATCACATCATAAAACTCATTTCGGGCATGAATGCGATCGCTGCAACGCAGTTTTTAAAAAAGGACTGGACCTAGCGAAACATATACAAGAGACTCACGGTTTAGAGCCGCCTGATAGCTCCTACACGAAAAAAAACTACATCTGCAGATTCTGCGGCAAGAAGCTTAGCACGTATCAATCGTTAATAAACCACGAAAGAATTCATACTGGGGAAAAGCCGTTCAGTTGCCCGATATGTCACCGGTCCTTCCGGAGTTACACCTCTAGATGGACTCATGTACAACGTCATCAGAAGGGAACCTTTGTGTGCGAACATTGTGGAAAATGTTTCAGTTACAAGCAGAATTTAATTGCGCACATTTCGACACACCTGCCGGTAGAGGATCGCAAGTATCAGTGTAATATATGCGGAAAGAAGTTTTTGAGGAACAGTCATCTGACTATTCACAGACGTATTCATGAAGGATTACGACCCTTTAAATGCGACGTGTGCTCGCTAAGTTTCACGCAAAAGGGTGACATGAAAAGGCACCGAATGCGGCACTTTAAGGAAGCCGAACCTGTGAAAAATACATGA
- Protein Sequence
- MDTRVDYSDKIVDISHEKFEICRLCGEKSLQYVPIFEDKDNFIPEKISKCLPIIIFPNDNLPSNVCRRCLNYLNISCKLILTAVEVDRRLRIQLDQTREDAIFINKDVAPYEEPKISEPIIRPLLLKELKRRAIIGPIECDLCDLNFQDVNTFDNHMEQFHFLKWRCSLCDNSFYESNELITHKALRHSGNIVICNSCQHTDQNNKQEITDKSIQNDQNNKKIKGKNIQNDQINAQEIMDEKNVQKDPNKQEFIDKKNVQNYQNNTREIIEKTIQNDQKTEQEIIDKNSYEKEIVTFTKNDEMAVSVDLAMDIAKDIVEMDIVETENEDDSMQALLEQTDDSSDSETDKIIEKYKRFLEQLKEKELLQKEKLFCDSCKIRFGDERHFKAHNKIHEERAVTCTKCSTECSSTYDLFLHKREKHNMYKTVQLKYMCNKCGKFFTHSWRWEAHNEDECSRMMKRCCKYCNAVFQTHLKLTRHLRKHKWEMFNDPTVTVYKCVACPKIFVDKELYEKHRNVHDPECWDKFRCTTCDRPFTDKIRLRDHQLSVHQNVKPYDCNICGRSFLRLYEMKSHHKTHFGHECDRCNAVFKKGLDLAKHIQETHGLEPPDSSYTKKNYICRFCGKKLSTYQSLINHERIHTGEKPFSCPICHRSFRSYTSRWTHVQRHQKGTFVCEHCGKCFSYKQNLIAHISTHLPVEDRKYQCNICGKKFLRNSHLTIHRRIHEGLRPFKCDVCSLSFTQKGDMKRHRMRHFKEAEPVKNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00129204;
- 90% Identity
- iTF_00129204; iTF_00127669; iTF_00128441; iTF_00129948; iTF_00126181;
- 80% Identity
- -