Basic Information

Insect: Aphaenogaster floridana
Gene Symbol: -
Assembly: GCA_003063835.1
Location: NJRP01000040.1:430686-435980[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.35 41 5.4 6.6 2 23 298 320 297 320 0.97

2 18 0.13 15 6.7 3.9 1 23 369 391 369 391 0.97

3 18 0.16 19 6.4 1.3 1 23 440 462 440 462 0.98

4 18 0.046 5.4 8.1 0.1 1 20 510 529 510 531 0.91

5 18 0.00048 0.055 14.4 1.4 1 23 571 593 571 593 0.98

6 18 0.00049 0.057 14.4 0.4 1 23 640 662 640 662 0.96

7 18 0.00055 0.064 14.2 0.1 1 23 668 690 668 690 0.97

8 18 9.9e-06 0.0011 19.7 0.4 1 23 734 757 734 757 0.96

9 18 0.00034 0.039 14.9 2.6 1 23 763 786 763 786 0.97

10 18 5e-06 0.00058 20.6 1.0 2 23 794 816 793 816 0.97

11 18 0.00014 0.017 16.0 0.0 1 23 824 846 824 846 0.93

12 18 0.073 8.4 7.5 0.3 1 20 906 925 906 925 0.97

13 18 7.7e-05 0.0089 16.9 0.2 2 23 945 966 944 966 0.97

14 18 3.9e-05 0.0045 17.8 0.8 1 23 979 1001 979 1001 0.96

15 18 1.6e-05 0.0019 19.0 3.7 1 23 1023 1046 1023 1046 0.97

16 18 0.0013 0.15 13.1 1.6 2 23 1106 1128 1105 1128 0.96

17 18 0.0017 0.2 12.6 1.9 1 23 1150 1173 1150 1173 0.93

18 18 0.0065 0.76 10.8 0.2 2 23 1265 1287 1265 1287 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.35	41	5.4	6.6	2	23	298	320	297	320	0.97
2	18	0.13	15	6.7	3.9	1	23	369	391	369	391	0.97
3	18	0.16	19	6.4	1.3	1	23	440	462	440	462	0.98
4	18	0.046	5.4	8.1	0.1	1	20	510	529	510	531	0.91
5	18	0.00048	0.055	14.4	1.4	1	23	571	593	571	593	0.98
6	18	0.00049	0.057	14.4	0.4	1	23	640	662	640	662	0.96
7	18	0.00055	0.064	14.2	0.1	1	23	668	690	668	690	0.97
8	18	9.9e-06	0.0011	19.7	0.4	1	23	734	757	734	757	0.96
9	18	0.00034	0.039	14.9	2.6	1	23	763	786	763	786	0.97
10	18	5e-06	0.00058	20.6	1.0	2	23	794	816	793	816	0.97
11	18	0.00014	0.017	16.0	0.0	1	23	824	846	824	846	0.93
12	18	0.073	8.4	7.5	0.3	1	20	906	925	906	925	0.97
13	18	7.7e-05	0.0089	16.9	0.2	2	23	945	966	944	966	0.97
14	18	3.9e-05	0.0045	17.8	0.8	1	23	979	1001	979	1001	0.96
15	18	1.6e-05	0.0019	19.0	3.7	1	23	1023	1046	1023	1046	0.97
16	18	0.0013	0.15	13.1	1.6	2	23	1106	1128	1105	1128	0.96
17	18	0.0017	0.2	12.6	1.9	1	23	1150	1173	1150	1173	0.93
18	18	0.0065	0.76	10.8	0.2	2	23	1265	1287	1265	1287	0.94

Sequence Information

Coding Sequence: ATGGACGAGGACGTGGTGGAGATCGAGAACGTGGAGAGTGTGTGCAGACTGTGCCTTTCCACGGACGAGCCTCGATCCTCGGTGTTCGCGACgcacgaggaggaggaggtggagaagAAGGACTCTGGCGTGCCGCTGGCCGCCAAGATTCAGGCCTGCTTGTCGATCCAgatttcaaCAACCGATAAGTTGTCCACGCTGATATGCGCAAATTGCGTGAAAAATGTGAATCAATGGCATACTTACAAAGAGTCGTGTCTGCGCTCCCAGGAAAAGCTACTAGAATGGCTGGCAAATCAATTGCAATCAAATCCTACGGTTGCAACGATCAAGGATGAACCAATGGACTTGGATTATGAAGATAATGTAGAGATTATCTCAGAGATCACCAATAATTTAGAACAATcaCATCCACCAACTCAGACAGTGGAAAACGATGAATCTAGTAATGAGAAGGTACAAGAGGTAACAGATAATAACGATGCGAGTAATGAGAAAATGCAAGAGGTAACAGATAATAACGATGCGAGTAATGAAAAAATGCAAGAGGTAACAGATAACGATACGAGTGATACTAATAAAGACCCTGAACCAATTTCGTCTGCAGTGGAAAAGGAAACTGACAAGGAAGAAAATCAAACAGATCAGCAAGATGTAATTCTATGTTCTGTTAAAAGCGAGCCACAGGATGATGACGATAGCGACTGTACCATAGAAGTAGAATCGAATAGTAGTGAATTGCTATTGAATCCTATGGCAGTCGCCGAGACAGAGGACACAGTCATGGAGGCTGATTCCACGCAGAAGTCTAGCGCGGCTGGCGCACCACCGAAGAAGAAATTGAGACGCGGTCCTCACACTCACTTCAGAGGAACACGTGTTTTTAAGCAGAAGTGCACGCACTGCCAGATATTCTTGCATTCTAAGTACACATACATAAAGCACATGCAGCGGTTCCATAGTAAAGAAAACGGCATCGAGAATTCAGAGTTGCAGAACGATGAGGAGGAGATGATCGAGGATCTGGAAGATGAATTGGTCAGTATGGAGAAGGACTCACCGCTGACGCAAGTCCAACAGGACATTATTAGCCAACTGAAAACTTTTTCATGCTACTCTTGCGAGCAATCGTTTAATGATCGACGCAGCACTCTTTCTCACATACGTCATCATCTGCCGGATCTGAGGCCGTACACGTGTATCGCCTGCCTGACAGAATTCCCTGATCGAGCGCTGTACCAGGTACACTGCGCAGCTTCCTTTGAATGCGCCATGAAGATCGCCCTAGTCATACCGAAGCACGGTGACGAACGATACTTTACATGCAACATGTGCCTGCGCTCAATGAAGGGTAGAAAGGAGTTGCTCAGTCACTTGTCAAAGCACTCTGACAAACAATACGAGGAAATGATAGGACCGACGCGAGCCCCGCCCAAACTAAAGCCGATGGCGCCGTTACCCTCTACGAAAAACAGTATCCCCAAGATGAGTATCGGACCTTACAAGAACGGCGATCCAGCACATAATCACGCTTGCGATCTATGCGGCATGATCTATCGATACCGACCCAATATGATTAAGCACAAAGAGATGTGCATGCAGCTGAAGCCGGAAAACAGAACATTGTACAAATGCGTGCATTGTTCCATGACGTACCTTGTGTTTAAGAAGTTTCATTATCACATTACGGCCGATCACAAGAAGAAAGATTTTACTTGTCCCATGTGCTATTCCAAATTCCGATCGCCTAGTGATTTCCTGACCCATTACGAGACTCATCGCGCGACAGTGCAAGACAATCGGCAAATGCAGCATGACAGTACCTCGCAGAACGCGGTTCAAACACCATTGAAAGAACGTAATGCTTTCGAAGTAAATGCCAAGTCAAGAATGAGCTCGCGAATGTCAAGTCAGAAGTACAGCTGTCCTCTTTGTGCCCAGGAGTTTTCCACGAAGAACGAGCTGAACGAGCACCGGACCCTTCATCTTAAAGTAAAGATATACTCGTGCGCCATTTGCCGCAGTATGTTCAGCAGCGCTGGTGCCTTGGAGATCCATATGAAGGATCACGGTATCGAGGATCCGAACGAAAGGAACGCCAACATTTCCTGCGTGGAATACGGCAGTTTGGATGAGGACGTGAGGATTGAGAAAGATTCGATAAATACCAGTGCCATCTCGGATCCTGGTACACAGATTCATGAATGTGGCGAGTGCGGTAAGGTATTATCCAGTTACGCTAATCTCCGGCGACATACTAAAATTGCTCACCGAAACTCTAAGACGTACGAGTGTAACGAGTGCTCGCGAATGTTTATGCGTAAAGATCTGTACGATCATCATATGCAAATCAAGCACAATTGTAAGAAGACAATGCTGCAATGTCCGCAGTGTCCTAAGAGTTTTGTCTTCCAATCAAACTTCACTTATCACTTCCGTACTGCTCATCTTGAGAAATCACAGAACGGTTACGCCTGCGATATCTGCGGCAAAGTTTTCGTTGAGGAAGCGTCTTTGAAAATACACAGGGGCTGGCATAATCGCGCCAATTCGCGTCTGAGCACTCGATTTATATTGGGCAATCAGAAGGCATCCAATGAGAAGCAGAAGGAATCCAACAGTGTCGCGTCTGGTGAGAATTTAGAACGGCCAGCAAGAGCACGGAAGTCTTTCCCTAATCCTCCACCTCAATCGCCAGCGACAACCTCGGGAAATTTCCAATGTCAAGTATGTAATGACAAATTCAACGATGTCACAGAACTGAGGACTCATCTGTGGGATGTTCACTGCGCCCGCAACAAACCGGAAAAGAGTTTCTCTATCGACGAGCTTCAGTGCGAACTTTGCACGAACGTTTTCCCTGATCAGGAAACCTTGACATCTCATATGCGATGGCACAAGGCCAATCCTATTCTTAGTGACATACAAAAGGTGTTTGCCTGCGATGTATGCGGCAAGTCCTACAGTTCGAAGAAGGTTTTATGGAAGCACAAGAAGCTTCACAAGGCTACCGTTGTAGCCTCGATCAAGTTCCAATCTTTGGCCAGAAAACCGATGGCTACACAGTTCCAATGTAATTTCTGCCGCAAAGTCTTTTCGAGCAGTCAGTCTCTGCAACGACACAAACTCACCTTCCACAGTGAGTCGCAGAATCAACAACGTGCTCGGCAACAGCTGTACAATACCGATCGATTACTGTCGTTTGAAGAAGAACCGAGGGCAAAGCGCTTAAAGGTCGAAATCGAAAATGACGATTCACAGACCAAGCTATCGCCTTTCGCCATGGACTTTGCCGGCGAAAAAAGAAAACCGGTCATGTGTCACGTTTGCAAGAAAATGTTCCCCAATATGAGTGTGCTGTACAAGCACAAGCAGACAGTCCACAAGACCGGTGCAAAAAAAGATTCGATACCTCAGTGCATACCGATGTCGACTCAGGATGGCAAGTTTTCATGCAACATCTGCTTCAAGGAATTCCCCCGTCTGTCGAGACTGCGACAGCATTTTACGATCAAGCACAAGAAGACGTCTGGAGCCGGCAGCGTCTCGAATAATAACAAATTGCTCCCGAAACCTGAGAGTAAACCGCGACCAAAAGAGTACGAAGTACAGGCCTATCACAATAACGTGATGTACAGCTGCAAGCTGTGCAAGCAGTGCCATGTTTTCAACAAGGAGTCCATCATGAGCCATATCACCAACGTGCACAATACAGTGTATCAAGCCGACAGCAAGACGTTCCACAGGGAGGTCAATCTGGCCACTTATGTAGTGAAAGATGCAATCGGAGCTACCTGCCCGCTATGCGACGTCAAGTATCCTAACAACAGGGCTCTGAAGATACACTACGTTAAGTTCCACGATAATACCGATTAA
Protein Sequence: MDEDVVEIENVESVCRLCLSTDEPRSSVFATHEEEEVEKKDSGVPLAAKIQACLSIQISTTDKLSTLICANCVKNVNQWHTYKESCLRSQEKLLEWLANQLQSNPTVATIKDEPMDLDYEDNVEIISEITNNLEQSHPPTQTVENDESSNEKVQEVTDNNDASNEKMQEVTDNNDASNEKMQEVTDNDTSDTNKDPEPISSAVEKETDKEENQTDQQDVILCSVKSEPQDDDDSDCTIEVESNSSELLLNPMAVAETEDTVMEADSTQKSSAAGAPPKKKLRRGPHTHFRGTRVFKQKCTHCQIFLHSKYTYIKHMQRFHSKENGIENSELQNDEEEMIEDLEDELVSMEKDSPLTQVQQDIISQLKTFSCYSCEQSFNDRRSTLSHIRHHLPDLRPYTCIACLTEFPDRALYQVHCAASFECAMKIALVIPKHGDERYFTCNMCLRSMKGRKELLSHLSKHSDKQYEEMIGPTRAPPKLKPMAPLPSTKNSIPKMSIGPYKNGDPAHNHACDLCGMIYRYRPNMIKHKEMCMQLKPENRTLYKCVHCSMTYLVFKKFHYHITADHKKKDFTCPMCYSKFRSPSDFLTHYETHRATVQDNRQMQHDSTSQNAVQTPLKERNAFEVNAKSRMSSRMSSQKYSCPLCAQEFSTKNELNEHRTLHLKVKIYSCAICRSMFSSAGALEIHMKDHGIEDPNERNANISCVEYGSLDEDVRIEKDSINTSAISDPGTQIHECGECGKVLSSYANLRRHTKIAHRNSKTYECNECSRMFMRKDLYDHHMQIKHNCKKTMLQCPQCPKSFVFQSNFTYHFRTAHLEKSQNGYACDICGKVFVEEASLKIHRGWHNRANSRLSTRFILGNQKASNEKQKESNSVASGENLERPARARKSFPNPPPQSPATTSGNFQCQVCNDKFNDVTELRTHLWDVHCARNKPEKSFSIDELQCELCTNVFPDQETLTSHMRWHKANPILSDIQKVFACDVCGKSYSSKKVLWKHKKLHKATVVASIKFQSLARKPMATQFQCNFCRKVFSSSQSLQRHKLTFHSESQNQQRARQQLYNTDRLLSFEEEPRAKRLKVEIENDDSQTKLSPFAMDFAGEKRKPVMCHVCKKMFPNMSVLYKHKQTVHKTGAKKDSIPQCIPMSTQDGKFSCNICFKEFPRLSRLRQHFTIKHKKTSGAGSVSNNNKLLPKPESKPRPKEYEVQAYHNNVMYSCKLCKQCHVFNKESIMSHITNVHNTVYQADSKTFHREVNLATYVVKDAIGATCPLCDVKYPNNRALKIHYVKFHDNTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00129189;
90% Identity: iTF_00129189;
80% Identity: -