Aflo023140.1
Basic Information
- Insect
- Aphaenogaster floridana
- Gene Symbol
- -
- Assembly
- GCA_003063835.1
- Location
- NJRP01004615.1:1900-7210[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.051 5.9 8.0 1.6 1 23 302 324 302 324 0.94 2 12 0.00064 0.075 14.0 1.9 1 23 329 353 329 353 0.91 3 12 0.00052 0.06 14.3 0.6 1 23 392 415 392 415 0.97 4 12 1.9e-08 2.3e-06 28.2 1.0 1 23 420 442 420 442 0.98 5 12 0.0046 0.54 11.3 0.1 1 23 451 474 451 474 0.89 6 12 1.2e-06 0.00014 22.6 4.6 1 23 480 502 480 502 0.98 7 12 1.4e-05 0.0016 19.3 2.3 1 23 508 530 508 530 0.97 8 12 0.00011 0.012 16.5 2.1 1 23 536 558 536 558 0.98 9 12 1.2e-08 1.4e-06 28.9 0.9 1 23 564 586 564 586 0.99 10 12 5.3e-06 0.00061 20.6 3.3 1 23 592 614 592 614 0.98 11 12 4.3e-06 0.0005 20.8 1.0 1 23 648 670 648 670 0.98 12 12 2.3e-07 2.7e-05 24.8 1.5 1 23 676 698 676 698 0.98
Sequence Information
- Coding Sequence
- ATGGTAGATGTACATCTACATGACTCGACGATCTGTCGATTGTGCGCGGCAGACAACGGCAACGAGCCTCTGTTCGTCAGCGAGACAGGCGAGTCGGATCTGTGCTCGCTGGTGAATCGTTACTTGCCGCTGAAGATTTGTGATGATGGAAAATTACCACGGACAATTTGCCCTGGTTGTAATATCCAATTGGAAGCGACAGCAGAATTCTTTGAGTTATTGGTGGCTGGTCAGCGCAAAATACGTGAACTTTGGAAACATCAAGTGGAGCAGCAGCGCAAAGCAGAACGCTTGCGCAATAGAAAGGAAAATGCAGAGTTTGGAACAGAAGAAATGGAAATGGATAATACGGCTCAGTACAATGAGGATGAGCAATATGAGCAGCAAATGATTATTAAGAtTATGCCAGATGGATCTATGTATGCAGCGGAACATGAAATGAGTTTGCAGATGGAAGGCTTGACTAAGCCAAGAAGAAAACGTGGACGTCCACCCAAAGTACACACAGAGACAGATTCTGtggCAACAAAAGAGAATCCTGCAGAAGCTGCAAGTCAAGGTGAAGAGGATAAgcaggaagaagaagaagaagtggaTGGTGATGGTAGACGCAGAAGGAAGCGTAAAGTTCCCAAAAgatttttggAAGCAGTGCAAGGAAAAGAATTGGAAAGAATATTCAAGGAGGAAGGTGTGATCGATGAAGAAGACGATGATGATTCTGAAATATTTGATGATTCGGAAGATCTGTTAAAAGCTTCTAGTCAGGATTGTCAGGAAGGTATACATAATGaaataatagGTCATCTCGAAACAGAAGAGGGTACAGACTTGGGTGAGGTGGTAATTGTAAACCGTGGAAGAATACGATCAAAGTCAAAACTGCGCCGTCGAAAAAATAGATTCACATGCCAACTCTGTGGCAGGGGTTTCCTACAACGTAGCAAATATATAGTACATAAGAGTTTTCATAAAGGTATCAAGCACGAGTGTACTCAGTGCAAGAAGCTATTTGATAGTAAAGAGAATTTGATATTGCATCAAGAGACGACTCAACATAATTTAAATCCCACCGAAGAAAATGTCGAGGAGTCACATGAGATGCATAGCAAAGAACAGAACACTTCCACGATGAAGCAGGAGCAGGTAGCAGGAGATTCCAGAACTACGATTTATATGTGTGAAAAATGCAACAAGCAATTTGGAATGAAACAGGAATACGAATTGCATTTGAGAGTGGTGCATGAGCAGCAAGAATTCACTTGTAACATTTGTAACAAGAGTTTCATAAATCAATCGGATTTGAAGATGCATATGATAACGCACGGGAAAACTAAATCGGATAAGGACTATGCTTGCGATATCTGCGGCAAGGTTTTAAATCATCCGAGTTCCGTCTTGTATCACAAGGAAGCCGAACACAACAACGGGCGTCGTTTCGTCTGCAACAAATGCAACAAAAGCTTCAAACATAAACAATTGCTTCAGCGGCATCAACTGGTGCACTCGGATAATCGGCCGCATGTTTGTAAGTCCTGTAATGCCAGCTTCAAGACAAAAGCAAACTTGATTAACCATCAGTCCACTCATACGGGccagaaaaaatatatctgtgAGATTTGCAAACAACAATTTGCGCACAAGACTAGTCTCACTTTACATTACAGATGGCACAACGGTCAAAAGCCATACACTTGCACGGTATGCCAAAAGAGCTTTTCGCAGAATGGCAATTTGCAAGAACATATGCGCATTCACACCGGTGAGAAACCATACAGTTGCGATTTCTGCGGCCGGAAGTTTACCACATCGTCGCAATTTAAGCTGCATGTAAAACGGCATACCGGCGAGCGGCCGTGGAAATGCGAATTTTGTTCAAAGTGCTTCTTGCACAAGGATACATGGAAATGTCACGTTCGTCGGCATAAGGGGGAACGTCCATTTCAATGCAACCAATGTAACCGTGGATTTACAGAGCAATGGGCGCTGAAAAAACATCTTCGCTTGCACACTGgtGAGAAGCCTTATTCTTGTGATGTGTGCGGTAAAGCTTTCGCCGATTGTTCAAATCTGACAAAACACAAAAAGGTACACAGGGAGAATAAGATGTTAACTGTGAACAGATCGGAAGGATCTCCGATCGGCGAAGTATGGCAAATTCTACCGAACTCACAGGAGGCTAACGAACAGACGTTCAATGATCAAATAATAACTACTGACGAAACGTCTAATGATGGGATTCAACAGATTATTTATGTATCTTATCAAGATCCTGATGATCCTAATCAATCACGAACATTGCATTTGgTTGACGCTAGCATGATCAAAAACAAAGACGAGATAGCGACAAATGCGAATTCCTTGTCACGTTTGGATGTGGCGAACGACGAAATCATTaccaataaaattatgaataatgtaGCCAGCAATAATGAGGAGCAGTCAGAGATCGAATTATCTGAATCGGATTTGCAGTTGCAGatTACAGATGAACACGGAAATCCAATTCCGTTGTCCATTCAAGAGGCTCGACAGCTTTTCTCACAGGGGAACTTTATCAACCAGTTGAATGACAGCCAAATCATTAGGGTTCACCCTGGAATGTTCACGCAACAACTCCAAGCCTTAAATATTCAAGTTGATGAAGATACTGTAGAGGAAAATGGAATCGTGGTGCGTTCGAATACGACTAAAAGCATCGAGACGATGTCAGCAATTCAAGCCGACGCAGAAGCAATCGTCCAAGCGCTTGAGGATGAGGATACCGATGCAACGGCAGTTGCGACGATCAATCAGCTGGGGAGTATCGAGCAAGCTGAACTTGCGGACGGTGAACAAGCGATCGAATTTATGACCCAGGATGGGCAGAAGGTTCGCGTTCTAACATCGTATCCTGTCGATCCGGCGCAGCTCGCATCAGAGTACCTGACtattgtgtaa
- Protein Sequence
- MVDVHLHDSTICRLCAADNGNEPLFVSETGESDLCSLVNRYLPLKICDDGKLPRTICPGCNIQLEATAEFFELLVAGQRKIRELWKHQVEQQRKAERLRNRKENAEFGTEEMEMDNTAQYNEDEQYEQQMIIKIMPDGSMYAAEHEMSLQMEGLTKPRRKRGRPPKVHTETDSVATKENPAEAASQGEEDKQEEEEEVDGDGRRRRKRKVPKRFLEAVQGKELERIFKEEGVIDEEDDDDSEIFDDSEDLLKASSQDCQEGIHNEIIGHLETEEGTDLGEVVIVNRGRIRSKSKLRRRKNRFTCQLCGRGFLQRSKYIVHKSFHKGIKHECTQCKKLFDSKENLILHQETTQHNLNPTEENVEESHEMHSKEQNTSTMKQEQVAGDSRTTIYMCEKCNKQFGMKQEYELHLRVVHEQQEFTCNICNKSFINQSDLKMHMITHGKTKSDKDYACDICGKVLNHPSSVLYHKEAEHNNGRRFVCNKCNKSFKHKQLLQRHQLVHSDNRPHVCKSCNASFKTKANLINHQSTHTGQKKYICEICKQQFAHKTSLTLHYRWHNGQKPYTCTVCQKSFSQNGNLQEHMRIHTGEKPYSCDFCGRKFTTSSQFKLHVKRHTGERPWKCEFCSKCFLHKDTWKCHVRRHKGERPFQCNQCNRGFTEQWALKKHLRLHTGEKPYSCDVCGKAFADCSNLTKHKKVHRENKMLTVNRSEGSPIGEVWQILPNSQEANEQTFNDQIITTDETSNDGIQQIIYVSYQDPDDPNQSRTLHLVDASMIKNKDEIATNANSLSRLDVANDEIITNKIMNNVASNNEEQSEIELSESDLQLQITDEHGNPIPLSIQEARQLFSQGNFINQLNDSQIIRVHPGMFTQQLQALNIQVDEDTVEENGIVVRSNTTKSIETMSAIQADAEAIVQALEDEDTDATAVATINQLGSIEQAELADGEQAIEFMTQDGQKVRVLTSYPVDPAQLASEYLTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00128422;
- 90% Identity
- iTF_00128422;
- 80% Identity
- -