Basic Information

Insect: Aphaenogaster floridana
Gene Symbol: -
Assembly: GCA_003063835.1
Location: NJRP01000429.1:53518-57721[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0017 0.19 12.7 0.2 1 20 62 81 62 83 0.95

2 13 1.3e-06 0.00015 22.5 0.3 1 23 162 185 162 185 0.96

3 13 6.1e-05 0.0071 17.2 3.9 2 23 192 214 191 214 0.95

4 13 0.00092 0.11 13.5 3.6 1 21 220 240 220 245 0.94

5 13 2.1e-07 2.4e-05 25.0 2.4 1 23 252 274 252 274 0.98

6 13 3.3e-05 0.0038 18.0 1.5 2 23 284 305 283 305 0.98

7 13 0.00035 0.04 14.8 0.5 2 23 312 333 311 333 0.97

8 13 2.7e-06 0.00031 21.5 2.3 1 23 339 361 339 361 0.99

9 13 5.3e-06 0.00061 20.6 1.8 1 23 367 389 367 389 0.94

10 13 5e-05 0.0058 17.5 1.1 1 23 395 418 395 418 0.94

11 13 2e-05 0.0023 18.8 0.6 1 23 424 446 424 446 0.97

12 13 2.6e-07 3e-05 24.7 1.4 1 23 452 474 452 474 0.99

13 13 2e-05 0.0023 18.8 1.5 2 23 481 503 480 503 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0017	0.19	12.7	0.2	1	20	62	81	62	83	0.95
2	13	1.3e-06	0.00015	22.5	0.3	1	23	162	185	162	185	0.96
3	13	6.1e-05	0.0071	17.2	3.9	2	23	192	214	191	214	0.95
4	13	0.00092	0.11	13.5	3.6	1	21	220	240	220	245	0.94
5	13	2.1e-07	2.4e-05	25.0	2.4	1	23	252	274	252	274	0.98
6	13	3.3e-05	0.0038	18.0	1.5	2	23	284	305	283	305	0.98
7	13	0.00035	0.04	14.8	0.5	2	23	312	333	311	333	0.97
8	13	2.7e-06	0.00031	21.5	2.3	1	23	339	361	339	361	0.99
9	13	5.3e-06	0.00061	20.6	1.8	1	23	367	389	367	389	0.94
10	13	5e-05	0.0058	17.5	1.1	1	23	395	418	395	418	0.94
11	13	2e-05	0.0023	18.8	0.6	1	23	424	446	424	446	0.97
12	13	2.6e-07	3e-05	24.7	1.4	1	23	452	474	452	474	0.99
13	13	2e-05	0.0023	18.8	1.5	2	23	481	503	480	503	0.95

Sequence Information

Coding Sequence: ATGGCAGAAGAGATGAAGAGGATAGAGATCGTGAAGATTGAGGAGTGTCATATACTAATAGAAAACGAAGCCACAGAGATCTTATTTGATGGGAACATCCCACAGGAAGAACCTATAGTTGTGGCCAGTAGACCAGCCACTGATAATGAGAAagACGACCTGATCATTTCGGTTGTAACTGATTATCAATGCGTAACATGTCAGCGTATATTCCAGTCTAAGGATATGTTGCTGAAACATGTAGACATGTGCAGAGAAGAAGATGATTCGATCAATATTATGGGGCTTGATAATACGACAAGTTATGATtcagaagaggaggaagaggatgaGGACGATCCAttaagtttaagtttaagtGCTGAAGATTCAGATTCTAAGAGCCAAAAGAATAACAATGAAAAACCTGTAATCAAGCCCGTGCCCGAAACACAATGTCATTGCTGTGCGGAAGATTTAAAGACGGCGCATAGCGGTGGACAGTTCAAGTGCTCAAATTGCGACCTCAGTTTCAAGAATAAGGCATCTTTGGAAAGACACGTTATAGTCATACACTGGAAGTGTGACTCGTGCACATGCAACGAATGCGGCTCTTCCTTTCGTGATAAGAAAGCCTTGAATAAGCATCGTTATACAACACATGAAGATCGCAAAATTTTTAGATGTGAGCCTTGCGACACTTATTTCTCCCGGAGCTATCACTTAAATCGGCACATAATGCAGTCTGGTTGTCACGGTAGCATACGTAATACATTCAATTGTCAAGTTTGCAAAAAAGATTTTACACGTAAAGATAATTTGCGGGAACACTTGCGTACTCACGCGGGAACACCCCAAAGACAAAAAAAGAAGTGTAAATATTGCCCGAAGGAATTCTTTACGAATCAACAATTGTTGGTACACGAGCGCATGCACACGGGAGAGCGACCAGTCCAATGCGATTTATGTCCGAAGACATTCCTGTCGTCGCTTGCGCTAAAAAAGCATCGTCGCGTACACACCGGGGAGAAGCCATTCGAGTGTAAATACtGTCAGAGGAAATTTGCTGCTCGTGAAACGCTGAATCGTCACCAACGGACGCACACGGGTGAGAAACCGCATGTGTGTCAGTATTGTGGCAAATCATTCATACAAGCAGCGCAATTAAGGGCACATGTGTTCCATCATACTGGAGAGAATGGTTTTTATTGTGACGTGTGCGACAAGGCATTTAATCGAAAGGCGCGTTTGAATATCCACAAGAAATTCGTACACGAGGGAGCAATTCCATTCACGTGTGAAGCCTGCGATAAAGGTTTCACGCGAAGGGAAGATTTGGTGAAACACAAGCAGTTACACACTGGTCTCAAACCGTTCAAATGCAACAAGTGTCAGAAAGCTTTCTCGGCAAAGTCATCGTTGCAGGCTCATCTCAACACCCACAGACGCGAACCACCCCAGTCGTGCGTTGAATGCAACAGAGTGTTCATCCGGCAAGATTGCCTGATGCGGCATATTCGAGCGAAGCATCGGGAACTGTTGGAGGACGTAATGAACGAGGTTGAAAAGAAGCATTTGCAAACGCAGTTGTTCAAAATTGCGTCGATCGCCGATGCCAAAACGAAAACCGGTGAATCCAAAAAACTCTCCACCGATGAGTTATTGAAGGCCATCATAGACTTTTTGAGGATACTTATCGATGAGGAAACGTtacaaTTGTTTGGTTGGCCGGAGGCTCCGATACAAGACATCCTCGAAGCCGTGATCAGAAGATGCGGACATGATCCAGTAACGTCGGAGTCCAACGTGATGTTTACCGACAGGCTACGACAAAACATCAAGCTTCTGTTCTCCGTTGTCATCGACATGGTGAACGACAAAACGGTGAAGTCTCTCTTGACAACGAAAACGGTAGACGATGTCATCCTCCACGTTTTAGAAATATCTAACCGAAAGTAA
Protein Sequence: MAEEMKRIEIVKIEECHILIENEATEILFDGNIPQEEPIVVASRPATDNEKDDLIISVVTDYQCVTCQRIFQSKDMLLKHVDMCREEDDSINIMGLDNTTSYDSEEEEEDEDDPLSLSLSAEDSDSKSQKNNNEKPVIKPVPETQCHCCAEDLKTAHSGGQFKCSNCDLSFKNKASLERHVIVIHWKCDSCTCNECGSSFRDKKALNKHRYTTHEDRKIFRCEPCDTYFSRSYHLNRHIMQSGCHGSIRNTFNCQVCKKDFTRKDNLREHLRTHAGTPQRQKKKCKYCPKEFFTNQQLLVHERMHTGERPVQCDLCPKTFLSSLALKKHRRVHTGEKPFECKYCQRKFAARETLNRHQRTHTGEKPHVCQYCGKSFIQAAQLRAHVFHHTGENGFYCDVCDKAFNRKARLNIHKKFVHEGAIPFTCEACDKGFTRREDLVKHKQLHTGLKPFKCNKCQKAFSAKSSLQAHLNTHRREPPQSCVECNRVFIRQDCLMRHIRAKHRELLEDVMNEVEKKHLQTQLFKIASIADAKTKTGESKKLSTDELLKAIIDFLRILIDEETLQLFGWPEAPIQDILEAVIRRCGHDPVTSESNVMFTDRLRQNIKLLFSVVIDMVNDKTVKSLLTTKTVDDVILHVLEISNRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01423083;
90% Identity: iTF_00126150;
80% Identity: -