Aflo017304.1
Basic Information
- Insect
- Aphaenogaster floridana
- Gene Symbol
- -
- Assembly
- GCA_003063835.1
- Location
- NJRP01000130.1:315654-316124[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.3e-08 7.4e-05 22.9 0.0 4 39 13 48 11 52 0.93 2 2 5.1 5.1e+03 -2.2 0.0 15 22 142 149 140 150 0.84
Sequence Information
- Coding Sequence
- atgtcCAAGAGAAAATACGGACAGTGGTGTCCACAATCCATGGATCGTGCTCTTGAAGAatacaaaaactataaaataacgcttaataaaatagaaaagaaatatgacattccaaaaaaaacatttttgcgaCATTATCGGAATCAAGTTTTACGTGGAACGAAGCGAACTACTGCAGATTCTGTGAACGGTAGAGAACCAGCCTTACCTCCTGAAGCTGAAAAAGAATTGGTTGACATTATCTTACAATATGAAGAAAATTTGTTTGGACTGACTGCGCTTGAAGTTAGACGATTAGCATATGAAATCCTCGTACAAAACCCTCATCTTCAGAATCCGTTTAACAAGGAAAAACAAATTGCTGGCAAAAAGTGGTATTATTCTTTTATGAAACGTCATCCTGAAATAAGTCTTCGACAACCAGAAAAGATATCTGTAAACCGCGCCAAAGGTTTTGGCGTCATAAactaa
- Protein Sequence
- MSKRKYGQWCPQSMDRALEEYKNYKITLNKIEKKYDIPKKTFLRHYRNQVLRGTKRTTADSVNGREPALPPEAEKELVDIILQYEENLFGLTALEVRRLAYEILVQNPHLQNPFNKEKQIAGKKWYYSFMKRHPEISLRQPEKISVNRAKGFGVIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -