Aflo022061.1
Basic Information
- Insect
- Aphaenogaster floridana
- Gene Symbol
- -
- Assembly
- GCA_003063835.1
- Location
- NJRP01000814.1:5996-29060[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.1e-08 7.1e-05 22.9 0.0 7 40 49 81 45 85 0.91 2 2 8.8 8.8e+03 -3.0 0.0 25 40 222 236 221 240 0.63
Sequence Information
- Coding Sequence
- ATGAATATAAAGACTCAACCAGCTGACAGCCGATTCGCGAAAAGCCGAAACAATTTCGCGAACAcaaccgcaaattcggcaaagAAACGCACCGCGCTTCGCACACCACCGGATGAGTCCCCGAACGCGCGACATCAAGTACGAGAAGCTTTAGTTGCTATTCAGAATGGTACACCAGTCTCGACAGCAAGTAAAATTTATCAAGTACCAAGAACAACTTTGCGACAAAAAATTCGAGGTAAAGCACCAGTGACCACTGGACATGTAGGTCGTGAATCAGTATTAGGTTCTCGTGTAGAAGCTATTTTGGTGCATTGGCTGTTGGAAACATGTCAAATAGGATTCCCTATCACAAAAGATGTTTTGTTGAATTCAgtcaaaaaatttgttgaaaccAAACATTTAGAAACTCCATTTACAAATAACACGCCAGAACGTAAATGGTTTGAAAACTTTATGAAACGACATCCTGCTTTATCTATGAAGAAAGCTGAATACTTAAGTAAGACAAGAGCAGCTGTTACTGAACAATATATTCGGAAATTGAAACAAACGTTTGATGTTTTTACTAGCAgtgataaagaaaatattactacGCTCTTTACTCACTGGCAAAAGTTTGTGAAAACTTGGCGTTCAAGACATGATGGGATGGATATACAAAAATTTGATATTCCCAGTGCATTATcagaaattattaaagaaaaaaacttttcaaaaactattcaaGCTGGTTTCAAGTGCTGTGGACTTTATCCCTTTGATCCAAACGCTGTCAAGTATGATAAATGTGTAACGCAAACACAAATTGCATCTGATGTAGTTGAGACTGCGAATCAACATTCTGTTTTAACTTCAACAAACACAGAACTATTACAAGAACTGGAAAAAAACATCaatgtaaatattttgcaaCGTTTCAAGGAATTGAAGAGTAACAAATTGAATTGGAATGGAGAAACTGAATATTCAGCTTTATTTAATACTTGGAGCAAAATTTACGATGATGttcacgataaaaatattactttgaaTCAAACTATTGACGTAAATAGTTTGGAGATATACATTGAAGAATCGAAAGAGATTTCGAATTgTAAGTCTAGTCTCGGacaagataaaaataaggaTGTTACAGAATCTGTATCAGTCGCTTTGGAAATCAGTGAAGAAACTAATTCTTCAATAACTACATATGACACAAGTGTAGCAGACAATACTGGTAACCATCAAGTAATTAGTAGTCAGCCACGTAATGGTAGCAGTGTTGTAAACTACACAGATCCTGACTGTGGAATAGTACTTAATAAATCTCCAGAAAAAGCTTTAAAAGACATTCTCGTATGGCCTCAACCCAAAAATACTAAGAAGAAACGAGTACAAACGGAACGTTTACCTTCTGTGCTTACCTCTGAAAAATGGTTAGAAGTCATGAAAgctaaagaagaagagaaacaaAGGTtattagaaaagaaagaagaagaaaagaagattagattgcagaaaagagaagaagcaaaacaaattaaattagcagcaaaaagaataaaattagaaaaaagagaTGAAGCAAAATCAAAAAAGAAAGCAAAGTGTAATAactaa
- Protein Sequence
- MNIKTQPADSRFAKSRNNFANTTANSAKKRTALRTPPDESPNARHQVREALVAIQNGTPVSTASKIYQVPRTTLRQKIRGKAPVTTGHVGRESVLGSRVEAILVHWLLETCQIGFPITKDVLLNSVKKFVETKHLETPFTNNTPERKWFENFMKRHPALSMKKAEYLSKTRAAVTEQYIRKLKQTFDVFTSSDKENITTLFTHWQKFVKTWRSRHDGMDIQKFDIPSALSEIIKEKNFSKTIQAGFKCCGLYPFDPNAVKYDKCVTQTQIASDVVETANQHSVLTSTNTELLQELEKNINVNILQRFKELKSNKLNWNGETEYSALFNTWSKIYDDVHDKNITLNQTIDVNSLEIYIEESKEISNCKSSLGQDKNKDVTESVSVALEISEETNSSITTYDTSVADNTGNHQVISSQPRNGSSVVNYTDPDCGIVLNKSPEKALKDILVWPQPKNTKKKRVQTERLPSVLTSEKWLEVMKAKEEEKQRLLEKKEEEKKIRLQKREEAKQIKLAAKRIKLEKRDEAKSKKKAKCNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -