Aflo022599.1
Basic Information
- Insect
- Aphaenogaster floridana
- Gene Symbol
- -
- Assembly
- GCA_003063835.1
- Location
- NJRP01001861.1:28143-28957[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.6 8.6e+03 -3.0 0.0 31 39 19 27 18 28 0.80 2 2 1.9e-09 1.9e-06 27.9 0.0 2 38 67 102 66 108 0.89
Sequence Information
- Coding Sequence
- ATGCCAGCCAAAGCTAAGAAGAAAGAGGATGCtacaaaaaataagaagaagaaagaaacatTGAGTAGTGTTGTGAAAAGAAGTGACAAAAGTGAGGTGAAGAGTACAGTTAAAAGTAAAGTAGTGGTCAAGAAAGTAGAAAAGAGcaagaagaaggaaaaaggatggaagaagaaggagaaaagAAAACAGTACTCTCATGAATCACTAGAGAAGGCTCTGCAAGCAGTTAACAAGGACATGTCATACAAGAAAGCTGCAGAAAAGTTTGGCGTACCGCCAACTTTTCTTCATAGGACTGTAAAAAATCctcataaattaaaatcaaaaagtGGTCCCTCTACAGTTCTACCTGCAAATTTAGAACAGAATATTATTAACTGGATCTTGTATCGAGCAGAAAGAGGAAACCCAGCTACGAAAACTGAGTTGTTAGATTCTGTGCAAAGTTATATACAACTAGAAGGGACAAAAACTCCCTTTATTAATGATAGGCCAGGACGACACTGGTACGAGAAATTCAGGAAACGACATCCTGAAATAACTCTCAGGACACCTCAGCATTTAAGTATGATTCGGGCTTCTGTTACTCAAGAGGTTATAAGAGGCTGGTTTGAAGAAATTGGATCGCACTTGAAGAACAAAAATCTATTAAGCATTCATGCATCAAGAGTCTTCAACTGTGACGAAACAAACATACAATTTGTACCAAAATCTGATAAGCGCTGA
- Protein Sequence
- MPAKAKKKEDATKNKKKKETLSSVVKRSDKSEVKSTVKSKVVVKKVEKSKKKEKGWKKKEKRKQYSHESLEKALQAVNKDMSYKKAAEKFGVPPTFLHRTVKNPHKLKSKSGPSTVLPANLEQNIINWILYRAERGNPATKTELLDSVQSYIQLEGTKTPFINDRPGRHWYEKFRKRHPEITLRTPQHLSMIRASVTQEVIRGWFEEIGSHLKNKNLLSIHASRVFNCDETNIQFVPKSDKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -