Basic Information

Insect: Aphaenogaster ashmeadi
Gene Symbol: -
Assembly: GCA_003063805.1
Location: NJRQ01000204.1:312132-316433[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.6e-05 0.0041 18.0 6.7 1 21 311 331 311 335 0.93

2 9 0.014 1.6 9.8 0.4 1 23 396 419 396 419 0.94

3 9 0.00017 0.019 15.9 1.1 1 23 449 471 449 471 0.98

4 9 9.1e-06 0.001 19.8 1.9 1 23 477 500 477 500 0.96

5 9 7.6e-06 0.00086 20.1 0.2 2 23 507 528 506 528 0.97

6 9 9.4e-08 1.1e-05 26.1 1.1 1 23 534 556 534 556 0.99

7 9 2.2e-05 0.0025 18.6 2.2 1 23 562 584 562 584 0.98

8 9 1.3e-05 0.0015 19.3 1.6 1 23 590 612 590 612 0.96

9 9 0.00024 0.027 15.4 1.9 2 23 619 641 618 641 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.6e-05	0.0041	18.0	6.7	1	21	311	331	311	335	0.93
2	9	0.014	1.6	9.8	0.4	1	23	396	419	396	419	0.94
3	9	0.00017	0.019	15.9	1.1	1	23	449	471	449	471	0.98
4	9	9.1e-06	0.001	19.8	1.9	1	23	477	500	477	500	0.96
5	9	7.6e-06	0.00086	20.1	0.2	2	23	507	528	506	528	0.97
6	9	9.4e-08	1.1e-05	26.1	1.1	1	23	534	556	534	556	0.99
7	9	2.2e-05	0.0025	18.6	2.2	1	23	562	584	562	584	0.98
8	9	1.3e-05	0.0015	19.3	1.6	1	23	590	612	590	612	0.96
9	9	0.00024	0.027	15.4	1.9	2	23	619	641	618	641	0.94

Sequence Information

Coding Sequence: ATGGAGCCCAGCAGCTCGATGCCGCCGAAAATGGAGTCCCTCGACGAGGACATTATGCTGATCGAGACAGTGAAGGGTATAGTGACGCACGAAGGGCGCAACGAGTCGGGGGAAGCCGAGGAGGACTTCTTCCTGATATCGCAGGACCAGACGGTGCAGTATCCCGGGGGGAACGTCGAGGGGACGATGTCCCACAGCCATCAGACGGAGGTCACCCTCGCGTGGATGCACCTCTGCAGGATATGCGCTAACTCGAACGATCGCACGGTACCCATCTTCGAGGGCGACGGGGTAGTGCATGACCTGTCCAGCAAAATACTCAAGTACTTGCCGATACACGTATCCGAGAGCGACACACTGCCGTTGCAGCTGTGTGAGCAGTGTGCGAACATCCTGATAACCTGGCACCAGTTAAGCGAGGGGTGTCTAAGCGCGGAGAGGAAGCTGCTGGAAATGCAGGAAACGCAATTGCGAGATAAGCAACAGTATTACAATCCTACTTGTTTGGATAATTTAGAAGTTACCACGCCGATACTTACAACAGCCAGCACGACCATTGTATCTAACATCACACATTCACTgCCAAATCAGCAGGACGATGACAAAAATGGAGCTCGTGGAacagaaaaaattaacaaatccAACAGGTGCGAGCTGGTAGAGGAGAGATCTTTTACGACATACCGCTCCTCGTGTAGCGCTGCTCTGTGGGCGAATAATGCTACGATAAAGTACGAAAGCAATCCAATGAGAAGTATGACACTGATTGCAGAGAACGCTAAAGATATTTCAGAAAGAGAGACACGCAAATCGTCGGATGACTGCAACATCGTAAGATACGATGAAAAGATGGATTCGAACGCTTCAAGATaccaagaaaaaaatgaatcgACAATTCTACAATCAACGAGTGAATCTGTGAACAAGGACTATACTTGCAATAACTGCCGACGCGTCTTCAAAAGAAAACACCATCTAATACGCCACATGGCAGGCTGCAAACATCACGATTCGGTCAACGAAGACTTATCAAGAACGCGCGCCAAAGTggcagaaaagaaaaagaagacagATGACAGTACggtgaaagagaaaaatcggCTGATGGAAGATATTAAGAGCACAAGCGACGAGGAAGAACTTTGCCTTCCATCAGTAAAATCACTAGGAAAACGACCCAGAGTTTATACATGTGGCTATTGCCAGCATATCGTGGAGAAGAGGAAACTGCTGAAAGCTCATCTGGCGGAGGCGCATCCCGAAGTCGCGAAGAGAAACCGAAAGTCCTTCGTGGCCACGGAGACGGTGTTGCGCGCCCGGATGGAGCACGATGGAAAGGTGTACTATCATTGCGGTGAGTGCGGCAAGAACCTGAATTCGCCGTACACCTTCTACTGGCACCTGCGTATCCACACGGGCGAGCGGCTGTTCACCTGCCACCTGTGCGGCAAGAGGTTCCGCGTGAATCAGGGATTGGCGCGACACTTGAAGGAAACCCACGCCGGCATCAAGAACGTACCGTGCGACGTGTGCGGCCGCATGTTCTCGACGCGGCGCAACGTCGAGGACCACAGACGCATCCACACCGGCGAGCGACCGTACGTCTGCAACGTCTGCGGCAAGACGTTCAAGCAGAAGGCCTCCCTGTTCGTGCACAATCGCACGCACACGGATGTGTTCCCGTTCAAGTGCAGCCACTGCGGCCAGACCTTCCGCACGCGGCCGCCGCTGATGTTGCACATCACCAAGCACACCGGCGAGAAACCGCACGCGTGCGACGTGTGCGGCCGTCGCTTCCGCATTAAGTACGAGCTGAAACGTCACCGACTGATCCACTCCGACGAGAAACCCTGGCGCTGCACCGACTGCAGCCTCTCATTCCGCCAGAAGCGCTACTTAGTTAATCATAAGAAACTCAATCATGAGCCACCACGCAGTTTGGCCGCCCCCGAAGTAACGGGTTGA
Protein Sequence: MEPSSSMPPKMESLDEDIMLIETVKGIVTHEGRNESGEAEEDFFLISQDQTVQYPGGNVEGTMSHSHQTEVTLAWMHLCRICANSNDRTVPIFEGDGVVHDLSSKILKYLPIHVSESDTLPLQLCEQCANILITWHQLSEGCLSAERKLLEMQETQLRDKQQYYNPTCLDNLEVTTPILTTASTTIVSNITHSLPNQQDDDKNGARGTEKINKSNRCELVEERSFTTYRSSCSAALWANNATIKYESNPMRSMTLIAENAKDISERETRKSSDDCNIVRYDEKMDSNASRYQEKNESTILQSTSESVNKDYTCNNCRRVFKRKHHLIRHMAGCKHHDSVNEDLSRTRAKVAEKKKKTDDSTVKEKNRLMEDIKSTSDEEELCLPSVKSLGKRPRVYTCGYCQHIVEKRKLLKAHLAEAHPEVAKRNRKSFVATETVLRARMEHDGKVYYHCGECGKNLNSPYTFYWHLRIHTGERLFTCHLCGKRFRVNQGLARHLKETHAGIKNVPCDVCGRMFSTRRNVEDHRRIHTGERPYVCNVCGKTFKQKASLFVHNRTHTDVFPFKCSHCGQTFRTRPPLMLHITKHTGEKPHACDVCGRRFRIKYELKRHRLIHSDEKPWRCTDCSLSFRQKRYLVNHKKLNHEPPRSLAAPEVTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00126931;
90% Identity: iTF_00126931; iTF_00129207; iTF_00128442; iTF_00129950;
80% Identity: -