Aash000262.1
Basic Information
- Insect
- Aphaenogaster ashmeadi
- Gene Symbol
- -
- Assembly
- GCA_003063805.1
- Location
- NJRQ01000145.1:82045-87308[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.37 41 5.3 6.6 2 23 326 348 325 348 0.97 2 18 0.13 15 6.7 3.9 1 23 397 419 397 419 0.97 3 18 0.17 19 6.4 1.3 1 23 468 490 468 490 0.98 4 18 0.048 5.5 8.1 0.1 1 20 538 557 538 559 0.91 5 18 0.00049 0.056 14.4 1.4 1 23 599 621 599 621 0.98 6 18 0.0015 0.17 12.9 0.2 1 23 668 690 668 690 0.96 7 18 0.00057 0.065 14.2 0.1 1 23 696 718 696 718 0.97 8 18 1e-05 0.0012 19.7 0.4 1 23 762 785 762 785 0.96 9 18 0.00035 0.04 14.8 2.6 1 23 791 814 791 814 0.97 10 18 5.2e-06 0.00059 20.6 1.0 2 23 822 844 821 844 0.97 11 18 0.00015 0.017 16.0 0.0 1 23 852 874 852 874 0.93 12 18 0.075 8.5 7.5 0.3 1 20 934 953 934 953 0.97 13 18 8e-05 0.009 16.9 0.2 2 23 973 994 972 994 0.97 14 18 4e-05 0.0045 17.8 0.8 1 23 1007 1029 1007 1029 0.96 15 18 1.7e-05 0.0019 19.0 3.7 1 23 1051 1074 1051 1074 0.97 16 18 0.0013 0.15 13.0 1.6 2 23 1134 1156 1133 1156 0.96 17 18 0.0018 0.2 12.6 1.9 1 23 1178 1201 1178 1201 0.93 18 18 0.0055 0.62 11.1 0.2 2 23 1293 1315 1292 1315 0.93
Sequence Information
- Coding Sequence
- ATGGACGAGGACGTGGTGGAGATCGAGAACGTGGAGAGTGTGTGCAGATTGTGCCTTTCCACGGACGAGCCTCGATCCTCGGTGTTCGCGACGCAcgaggaggaggtggagaaGAAGGACTCAGGCGTGCCGCTGGCCGCCAAGATTCAGGCCTGCTTGTCGATCCAGatttcagCAACCGATAAGTTGTCCACGCTGATATGCGCAAATTGCGTGAAAAATGTGAATCAATGGCATACTTACAAAGAGTCATGTCTGCGCTCCCAGGAAAAGCTACAAGAATGGCTGGCAAATCAATTGCAATCAAATCCTACGGTTGCAACGATCAAGGATGAACCAATGGACTTGGATTATGAAGATAATGTAGAGATTATCTCAGAGATCACCAATAATTTGGAACAATCaCATCCACCAACTCAGACAGTGGAAAACGATGAATCTAGTAATGAGAAGGTACAAGAGGTAACAGATAATAACGATGCGAGTAATGAGAAAATGCAAGAGGTAACAGATAATAACGATGCGAGTAATGAGAAAATGCAAGAGGTAACAGATAATAACGATGCGAGTAATGAGAAAATGCAAGAGGTAACAGATAATAACGATGCgagtaatgaaaaaatacaagagGTAACAGATAATAACGATACGAGTGATACTAACAAAGACCCTGAACCAATTTCGTCTGCAGTGGAAAAGGAAACTGACAAGGAAGAAAATCAAACAGATCAGCAAGATGTAATTCTATGTTCTGTTAAAAGCGAGCCACAGGATGATGACGATAGCGACTGTACCATAGAAGTAGAATCGAATAGTAGTGAATTGCTATTGAATCCTATGGCAGTCGCCGAGACAGAGGACACAGTCATGGAGGCTGATTCCACGCAGAAGTCTAGCGCGGCTGGCGCACCACCGAAGAAGAAATTGAGACGCGGTCCTCACACTCACTTCAGAGGAACACGTGTTTTTAAGCAGAAGTGCACGCACTGCCAGATATTCTTGCATTCTAAGTACACATACATAAAGCACATGCAGCGGTTCCATAGTAAAGAAAACGGCATCGAGAATTCAGAGTTGCAGAACGATGAGGAGGAGATGATCGAGGATCTGGAAGATGAATTGGTCAGCATGGAGAAAGACTCACCGCTGACGCAAGTCCAACAGGACATTATCAGCCAACTGAAAACTTTTTCATGCTACTCTTGCGAGCAGTCGTTTAATGATCGACGCAGCACTCTTTCTCACATACGTCATCATCTGCCGGATCTGAGGCCGTACACGTGTATCGCCTGCCTGACAGAATTCCCTGATCGAGCGCTGTACCAGGTACACTGCGCAGCTTCCTTTGAATGCGCCATGAAGATCGCCCTAGTCATACCGAAGCACGGTGACGAACGATACTTTACATGCAACATGTGCCTGCGCTCAATGAAGGGTAGAAAGGAGTTGCTCAGTCATTTGTCGAAGCACTCTGACAAACAATACGAGGAAATGATAGGACCGACGCGAGCCCCGCCCAAACTAAAGCCGATGGCGCCGTTACCCTCTACGAAAAACAGTATCCCCAAGATGAGTATCGGACCTTACAAGAATGGCGATCCAGCACATAATCACGCTTGCGATCTGTGCGGCATGATCTATCGATACCGGCCCAATATGATTAAGCACAAAGAGATGTGCATGCAACTGAAGCCGGAAAACAGAACATTGTACAAATGCGTGCATTGTTCCATGACGTACCTTGTGTTCAAGAAGTTTCATTATCACATTACGACCGATCACaagaagaaagattttacTTGTCCCATGTGCTATTCCAAATTCCGATCGCCTAGTGATTTCCTGACCCATTACGAGACTCATCGTGCGACAGTGCAAGGCAATCAGCAAATGCAGCATGACAGTACCTCGCAGAACGCGGTTCAAACACCATTGAAAGAACGTAATGCTTTCGAAGTAAATGCCAAGTCGAGAATGAGCTCGCGAATGTCAAGTCAGAAGTACAGCTGTCCTCTTTGTGCCCAGGAGTTTCCCACGAAGAACGAGCTGAACGAGCACCGGACCCTCCATCTTAAAGTAAAGATATACTCGTGCGCCATTTGCCGCAGTATGTTCAGCAGCGCTGGTGCCTTGGAGATCCATATGAAGGATCACGGTATCGAGGACCCGAACGAAAGGAACGCCAACATTTCCTGCGTGGAATACGGCAGTTTGGATGAGGACGTGAGGATTGAGAAAGATTCGATAAATACCAGTGCCATCTCGGATCCTGGTACACAGATTCATGAATGTGGCGAGTGCGGTAAGGTACTATCCAGTTACGCTAATCTCCGGCGACATACTAAAATTGCTCACCGAAACTCTAAGACGTACGAGTGTAACGAGTGCTCGCGAATGTTTATGCGTAAAGATCTGTACGATCATCATATGCAAATCAAGCACAATTCTAAGAAGACAATGCTGCAATGTCCGCAGTGTCCTAAGAGTTTTGTCTTCCAATCGAACTTCACTTATCACTTCCGTACTGCTCATCTTGAGAAATCACAGAACGGTTACGCCTGCGATATCTGCGGCAAAGTTTTCGTTGAGGAAGCGTCTTTGAAAATACACAGGGGTTGGCATAATCGCGCCAATTCGCGTCTGAGCACTCGATTTATATTGGGCAATCAGAAGGCATCCAATGAGAAGCAGAAGGAATCCAACAGTGTCGCGTCTGGTGAGAATTCAGAACGGCCAGCAAGAGCACGGAAGTCCTTCCCTAATCCTCCACCTCAATCGCCAGCGACAACCTCGGGAAATTTCCAATGTCAAGTATGTAATGACAAATTCAACGATGTCACAGAACTGAGGACTCATCTGTGGGATGTTCACTGTGCCCGCAACAAACCGGAAAAGAGTTTCTCTATCGACGAGCTTCAGTGCGAACTTTGCACGAACGTTTTTCCTGATCAGGAAACCTTGACATCTCATATGCGATGGCACAAGGCCAATCCTATTCTCAGTGACATACAAAAGGTGTTTGCCTGCGATGTATGCGGCAAGTCCTACAGTTCGAAGAAGGTTTTATGGAAGCACAAGAAGCTTCACAAGGCTACCGTTGTAGCCTCGATCAAATTCCAATCTTTGGCCAGAAAACCGATGGCTACACAGTTCCAATGTAATTTCTGCCGCAAAGTCTTTTCGAGCAGTCAGTCTCTACAACGACACAAACTCACCTTCCACAGTGAGTCGCAGAATCAACAACGTGCCCGGCAACAGCTGTACAATACCGATCGATTACTGTCGTTTGAAGAAGAACCGAGGGCAAAGCGCTTAAAGGTCGAAATCGAAAATGACGATTCACAGACCAAGCTATCGCCTTTCGCCATGGACTTTGCCggcgaaaaaagaaaaccgGTCATGTGTCACGTTTGCAAGAAAATGTTCCCCAATATGAGTGTGCTGTACAAGCACAAACAGACAGTCCACAAGACCGGTGCAAAAAAAGATTCGATACCTCAGTGCATACCGATGTCGACTCAGGATGGTAAGTTTTCATGCAACATCTGCTTCAAGGAATTCCCCCGTCTGTCGAGACTACGACAGCATTTCACGATCAAGCACAAGAAGACGTCTGAAGCCGGCAGCGTCtcgaataataacaaattgctCCCGAAACCTGAGAGTAAACCGCGACCAAAAGAGTACGAAGTACAGGCCTATCACAATAACGTGATGTACAGCTGCAAGCTGTGCAAGCAGTGCCATGTTTTCAACAAGGAGTCCATCATGAGCCATATCACCAACGTGCACAATACAGTGTATCAAGCCGACAGCAAGACGTTCCACAGGGAGGTCAATCTGGCCACTTATGTAGTAAAGGATGCAATCGGAACTACCTGCCCGCTATGCGACGTCAAGTATCCTAACAACAGGGCTCTGAAGATACACTACGTTAAGTTCCACGATAATGCCGATTAA
- Protein Sequence
- MDEDVVEIENVESVCRLCLSTDEPRSSVFATHEEEVEKKDSGVPLAAKIQACLSIQISATDKLSTLICANCVKNVNQWHTYKESCLRSQEKLQEWLANQLQSNPTVATIKDEPMDLDYEDNVEIISEITNNLEQSHPPTQTVENDESSNEKVQEVTDNNDASNEKMQEVTDNNDASNEKMQEVTDNNDASNEKMQEVTDNNDASNEKIQEVTDNNDTSDTNKDPEPISSAVEKETDKEENQTDQQDVILCSVKSEPQDDDDSDCTIEVESNSSELLLNPMAVAETEDTVMEADSTQKSSAAGAPPKKKLRRGPHTHFRGTRVFKQKCTHCQIFLHSKYTYIKHMQRFHSKENGIENSELQNDEEEMIEDLEDELVSMEKDSPLTQVQQDIISQLKTFSCYSCEQSFNDRRSTLSHIRHHLPDLRPYTCIACLTEFPDRALYQVHCAASFECAMKIALVIPKHGDERYFTCNMCLRSMKGRKELLSHLSKHSDKQYEEMIGPTRAPPKLKPMAPLPSTKNSIPKMSIGPYKNGDPAHNHACDLCGMIYRYRPNMIKHKEMCMQLKPENRTLYKCVHCSMTYLVFKKFHYHITTDHKKKDFTCPMCYSKFRSPSDFLTHYETHRATVQGNQQMQHDSTSQNAVQTPLKERNAFEVNAKSRMSSRMSSQKYSCPLCAQEFPTKNELNEHRTLHLKVKIYSCAICRSMFSSAGALEIHMKDHGIEDPNERNANISCVEYGSLDEDVRIEKDSINTSAISDPGTQIHECGECGKVLSSYANLRRHTKIAHRNSKTYECNECSRMFMRKDLYDHHMQIKHNSKKTMLQCPQCPKSFVFQSNFTYHFRTAHLEKSQNGYACDICGKVFVEEASLKIHRGWHNRANSRLSTRFILGNQKASNEKQKESNSVASGENSERPARARKSFPNPPPQSPATTSGNFQCQVCNDKFNDVTELRTHLWDVHCARNKPEKSFSIDELQCELCTNVFPDQETLTSHMRWHKANPILSDIQKVFACDVCGKSYSSKKVLWKHKKLHKATVVASIKFQSLARKPMATQFQCNFCRKVFSSSQSLQRHKLTFHSESQNQQRARQQLYNTDRLLSFEEEPRAKRLKVEIENDDSQTKLSPFAMDFAGEKRKPVMCHVCKKMFPNMSVLYKHKQTVHKTGAKKDSIPQCIPMSTQDGKFSCNICFKEFPRLSRLRQHFTIKHKKTSEAGSVSNNNKLLPKPESKPRPKEYEVQAYHNNVMYSCKLCKQCHVFNKESIMSHITNVHNTVYQADSKTFHREVNLATYVVKDAIGTTCPLCDVKYPNNRALKIHYVKFHDNAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00129189;
- 90% Identity
- iTF_00129189;
- 80% Identity
- -