Aash004180.1
Basic Information
- Insect
- Aphaenogaster ashmeadi
- Gene Symbol
- -
- Assembly
- GCA_003063805.1
- Location
- NJRQ01000185.1:388723-397777[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00013 0.015 16.2 3.1 1 23 118 140 118 140 0.96 2 19 2.9e-05 0.0032 18.3 1.5 1 23 146 168 146 168 0.98 3 19 0.28 32 5.7 1.9 1 23 175 198 175 198 0.94 4 19 1.3e-06 0.00014 22.5 1.3 1 23 204 226 204 226 0.98 5 19 0.13 15 6.7 3.9 2 20 232 250 231 254 0.82 6 19 0.0001 0.011 16.6 1.3 1 23 261 283 261 283 0.95 7 19 1.2e-06 0.00013 22.6 1.2 1 23 287 309 287 309 0.99 8 19 0.034 3.9 8.6 1.1 1 23 315 337 315 337 0.94 9 19 1.2e-05 0.0014 19.4 0.6 1 23 343 365 343 365 0.98 10 19 4 4.5e+02 2.1 0.2 5 23 511 530 509 530 0.89 11 19 0.0068 0.77 10.8 1.4 1 23 534 556 534 556 0.98 12 19 0.16 18 6.5 7.0 3 23 562 582 561 582 0.98 13 19 2.2e-05 0.0025 18.6 1.7 1 23 766 788 766 788 0.98 14 19 7.7 8.7e+02 1.2 4.7 1 23 796 819 796 819 0.89 15 19 7.7e-05 0.0087 16.9 1.0 1 23 835 857 835 857 0.97 16 19 0.4 45 5.2 1.7 1 23 866 888 866 888 0.95 17 19 9.3e-06 0.0011 19.8 6.2 1 23 893 915 893 915 0.98 18 19 0.00012 0.014 16.3 3.5 1 23 923 945 923 945 0.98 19 19 0.00081 0.092 13.7 2.9 1 23 951 974 951 974 0.93
Sequence Information
- Coding Sequence
- tacAATCAGCTAGATCCACTCTCGTCAACTTTTCTGATAGTAAAACTGGAAGACGATTATTTTCGCATCCCAAAGTCATTGAGCGTGTTTATGATGAAAGAACCGCCACCTGAGGAAAATAATTCCAAAGCTGAATCGAAAGAAGATGAAGGAGCAAAAGAAGAGAAGGATAATCGCGTCGAGAAGAATCAAAATCGCGTTGAAACcaggaagaaaaataaaaccatCATCGATGATTTGGATGATTTGGAGGATTTGGATGATACTCCCTTGGATTTCAGGAAACGGCGCAAAGATGAACTCTCGAAAACACGATCCGGCAAGCACACGACTAGTCCAAAGAAGAAGTCACATATCTGCGAGATCTGTTACATCACGTTCGACCGCAAGAGCAAGCTCACTAGTCACATGTTCAAGCATAGCAACTCACGGCCGCACAAGTGCACGATCTGTTCCAAAGGCTTCAAGACTGGTGCGTATCTTTCTAGGCATATGGAGATCCACGACGAGCCAGCGCAGCTTCACGCGTGCACTCTGTGCGAGTTCAAGGCGCGCACGAAGCCGTATCTAAAGATACATTACATTCGCAAGCACACCGAAGACTACAATTACAGCTGCGAACAGTGCGGCAAGATGTTCAAGGTGCAGTCCGACTACACGACGCACATGAAGGACCACGACACGGAGTCCTGCGTTTGCGACATATGCGGCACGTCTTATCCCAGCAAGAGCTCCTTGTACTTCCACAAACATTACAAACACAAAACGAAGATTAAGGAGTTCGAATGCCAGGTTTGTAGGAAGCGTTTCAAGACTCAGAAGAATCTCGACAGTCATGCTGAGCTGCACAAGATGAAGTACGTCTGCGAGCAATGCGGTATGGAATTCAAGTTTAAGTATGGTCTCACGAAGCATCTCAGGACGCATTCGGGCGAGAAGTCGTATCTCTGCGCGATATGCGGCAAGACCTTCGGCTGCCTCAGCTCGCAAAAGATCCATCTGCTGACTCACGTCGGCGAACGACCTTATGTCTGCGACATCTGCGGCCAGAGCTTCACCCAGCGGTCACCGATGATGCTGCACCGGAAGAAGCATCCTGGTGTGCATCCACCGCCACCACCCATCAAAATTACGAATCTCCTGCATGGCGTGCAAGACAAAATTGTTGTGAATAAAAGTGCCAAGTCTGTGCCACGTGATCCTCTTGCACAAAATTTCCTTGTGATTCAAAGCTACCATCAATTTTACCTTGTGCCGATGCAAGGTCCTTATGAGCTTGTCAAAGAtggagataaaaataagattatagaACCGCCGCGTCTTTCGCCGGAAGAAAAAGTGAAGGCTGCTGACGAATCTGCGGAGAAGCTTGAAGAATTGTATGAAGAAAAAGTGGAGATTGCTGACACATCTGCGGAGACGCTTGAAGAATTGTATGAAGAAAAAGTGGAAGTTACTGACAAATCTGCGGAGAagcttgaaaaattatatgaagataaaaaagatgaaTTGAATTTAGCAtcagaaatatACTGCAGCTTTAAGTCTGCAAAGGTTTCGAGCCTTAAATACCATCAGATGAAATGGCACGCTGACGTCTACAAGTGCCAGTTCTGCTCTGAATTATTCAAAAACAAAGCTGTATATCTGAAACATATGGAGCTCCACAATGCTACTACACTTTGCGATGTGTGTGgtcagatatttaaatatgattgtCATCTTACGCAACACAAATGTAAACATCAGAATGATGAAAATGATGTCCACAAGCAATTGCAACGTAAAGATGAATGTCAAGATAACGAAAAGCATtcaataaagataaatgaGCCTgcaaaacttaatttacaaaaatacaataatgagAGTCTTGAGAGAGACGAATTGAATCGCGATTTGGGTTTATTGAATGAAAAAAGGAAATCTGTTCTCGATCACATAgctgatgaaattttatatgaagtGTTTGGAGAAAGATGGGCaccaataataaaacaattagagtCTGAAAAGATTAGGGATGAGGTATTACTTGATAAGATAATTACTGATTCAGTAAAATTGTCAAgacatgtaattaaaaaagatacagtGGAAGACATGGACAAAAAATTGTTCGGTGAAGACATCGTCGACgacaaattttcttatatcgaCGAAGCGGACACAATGGAAGATACACTTTACAAGAAACTTCTTAACGGactttacaaatgtattatcTGTGAAATATTGTTGAACcaaaagaatgaaatattgtaCCACCTTAACAGTGAGCACAACTATCGTCTCTTCAAATGCGTAATTTGCAGCAAGAGCTTCATATTGGAATCCCACTTAAAGAGTCACCAACTTGTCCATCAAGAGGATGCTAATTCGTTATACAATTGCAGCGAGTGCAACTTTCATAGTAAATGGAAGGGGAATTTAAAAACGCACTTCATCGGCTGTCACGGAGAGTATCAATTTATTTGCGACAGTGAGCACAACTATCGTCCCTTCAAATGCGTAATTTGCGGCAAGAGCTTCATGTTCGAATCCCGCTTAAAGGTTCACCAATTTGTCCATCAAGAGGCGGATGCTAATTCGTTATACAATTGCAGCGAGTGCGACTTTCGTACTGAATGGAAGGAGAATTTAAAAACGCACTTCAGCTATCACGGAGAGTATCAATTTATTTGCGAATATTGTGGCAAATGCTTCAAGATGAAATCGCACTTTGAATCGCACCTTAGCACCCACAATGACTCTCAGCAATTACCGTACGTGTGCCATGTCTGTAAAAGGAGTTTTAAGACATTATCTTTGAGGAGCAAACATTTAATTACGCATTCAACAAAGAGGCCACATATCTGTGACATATGCGGAAAAGATTTCAAGAGGAGAGATGCTATGATCGCTCATTGTAGGAAGAAACATCCAGATGCACACGTGTCATCATCTGTGCCTCTTGGAGAAAAACAGTAG
- Protein Sequence
- YNQLDPLSSTFLIVKLEDDYFRIPKSLSVFMMKEPPPEENNSKAESKEDEGAKEEKDNRVEKNQNRVETRKKNKTIIDDLDDLEDLDDTPLDFRKRRKDELSKTRSGKHTTSPKKKSHICEICYITFDRKSKLTSHMFKHSNSRPHKCTICSKGFKTGAYLSRHMEIHDEPAQLHACTLCEFKARTKPYLKIHYIRKHTEDYNYSCEQCGKMFKVQSDYTTHMKDHDTESCVCDICGTSYPSKSSLYFHKHYKHKTKIKEFECQVCRKRFKTQKNLDSHAELHKMKYVCEQCGMEFKFKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRKKHPGVHPPPPPIKITNLLHGVQDKIVVNKSAKSVPRDPLAQNFLVIQSYHQFYLVPMQGPYELVKDGDKNKIIEPPRLSPEEKVKAADESAEKLEELYEEKVEIADTSAETLEELYEEKVEVTDKSAEKLEKLYEDKKDELNLASEIYCSFKSAKVSSLKYHQMKWHADVYKCQFCSELFKNKAVYLKHMELHNATTLCDVCGQIFKYDCHLTQHKCKHQNDENDVHKQLQRKDECQDNEKHSIKINEPAKLNLQKYNNESLERDELNRDLGLLNEKRKSVLDHIADEILYEVFGERWAPIIKQLESEKIRDEVLLDKIITDSVKLSRHVIKKDTVEDMDKKLFGEDIVDDKFSYIDEADTMEDTLYKKLLNGLYKCIICEILLNQKNEILYHLNSEHNYRLFKCVICSKSFILESHLKSHQLVHQEDANSLYNCSECNFHSKWKGNLKTHFIGCHGEYQFICDSEHNYRPFKCVICGKSFMFESRLKVHQFVHQEADANSLYNCSECDFRTEWKENLKTHFSYHGEYQFICEYCGKCFKMKSHFESHLSTHNDSQQLPYVCHVCKRSFKTLSLRSKHLITHSTKRPHICDICGKDFKRRDAMIAHCRKKHPDAHVSSSVPLGEKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -