Aash004178.1
Basic Information
- Insect
- Aphaenogaster ashmeadi
- Gene Symbol
- ZFY
- Assembly
- GCA_003063805.1
- Location
- NJRQ01000185.1:378673-382805[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.13 15 6.8 1.7 1 23 102 125 102 125 0.94 2 18 0.00053 0.06 14.3 2.1 1 23 141 164 141 164 0.97 3 18 0.028 3.2 8.8 2.8 1 23 185 208 185 208 0.96 4 18 3.8e-05 0.0043 17.9 1.3 1 23 214 237 214 237 0.95 5 18 4.2e-05 0.0047 17.7 0.6 3 23 244 265 242 265 0.94 6 18 0.0018 0.21 12.6 0.2 1 23 270 293 270 293 0.95 7 18 7.3e-07 8.3e-05 23.3 3.3 1 23 299 321 299 321 0.98 8 18 1.9e-06 0.00022 22.0 0.8 1 23 327 349 327 349 0.97 9 18 8.8e-05 0.01 16.7 0.8 1 23 355 377 355 377 0.97 10 18 2e-06 0.00023 21.9 1.8 2 23 444 465 443 465 0.96 11 18 0.28 31 5.7 1.5 2 23 495 517 494 517 0.91 12 18 0.057 6.5 7.9 1.4 1 23 535 558 535 558 0.89 13 18 7.7e-06 0.00087 20.1 1.9 1 23 564 587 564 587 0.97 14 18 0.00066 0.074 14.0 5.6 2 23 593 615 592 615 0.95 15 18 0.00014 0.016 16.1 0.6 1 23 620 643 620 643 0.97 16 18 5.5e-07 6.2e-05 23.7 1.7 2 23 650 671 649 671 0.97 17 18 5.4e-06 0.00061 20.5 0.9 1 23 677 699 677 699 0.97 18 18 8.6e-05 0.0098 16.8 0.4 1 23 705 727 705 727 0.96
Sequence Information
- Coding Sequence
- ATGCAAGCGTGGAAAGTGGTTGATTTGGAAGGATGTCTCTATTATGCCTTCCTTCCAGTAAATCAGACGTCAAAAATGATAGAAGAGAAGAATCAACGTGATCAGAAACGGGATGACGAAATGTCGAAAATCAATGTTGATAATGCAGAAAACTCCTTCGCAATTGCAAGTGACAACGATTTGACGTATATGAATGTGTTGAACAATGTTTACACAGTAAAGGTAGAAAACGAGAACGTATTTTCGATTGACGAAGTAGCAGCTATGGATGAAGATCAGTCTTGCAATGAAGAGGACAAGGTTTATGCTTGTGAAGAATGCAACATTTGCTTTCCTGTGATGCAAATGTTAAAATGTCATCAGGAAACAGTGCATGAACAGGATGAAAAAGCCGTAGAGAGTTACACAGAGAATATTACGTTCAGTTGCAACTTCTGTAGTTACGAGAGCATCAACAAATCGACTCTCAACTCGCACATTCGCAGGAAACATCCCACAAAACGCGGAATTAGACGGAGAAGCAGACTCAGAACCGTTATCATGCCGCAAGAGTACTCGTGCGATTTGTGCGGGTTCAAGTGTCCAAGCCGACGACGACTGAGGGAGCACCTCGATCGCAAACACGGATCCGAGTACAAGTACGATTGCGAGTACTGCGGCAAGAAATTCAAGGTGAAGGGCGACATGAGATTACACGTGCGTTTCAAACATAAGGAAAGTCCGATAATATGTGACGTCTGCGGCAAGACCTGCTCCAACAGTAATTCGCTGTACGTGCATCAGAAGTGGGCACATTTCAAGCCCAAGTATGAGTGCGAGATCTGCAAGAGGCGTATGGTCACGCAGGAGAACCTAGACCAGCATATCTTGCTTCAGCATGAGCGCAGAGAAAGTTTTATGTGTGAAGAGTGTGGCAAATCTTTCACAGAGAAGCACCGATTGAAGCAACATATGATGACCCATACCGGTGATCGACCGTACGACTGTCACATCTGTGGCAAGGCCTTTGCGCGTAGAACTGCTTACAGACAGCATTTGTTAATTCATACGGGGAAACGGCCGTACATTTGTGATATTTGTGGGAAAGCTTTTACGCAAAAACCTGGATTAATATGTCATCGAAAATCTCATCCTGGAGTGCATCCTCCTTTACCGGTAGTGCACATCGATCACATTCTCAATGATTTTATGAAGAAGGAGAAACCGACAGCGGGTATCTTTGTCGACAAAGCGGTGAAGAACGAAACTGAAGCGGAAACATCAATTTCTGAACgcagagaagagaagaaatcACAGGAGAAAGATCGCGAAGAAAAATGCAATTCTCTTAGCTGCGACGTCTGTCCTAAACGCTTCAAGAGCAAGTACTTATTGAAACGGCACAAGCTCACGCACGCGGCGGAGATCGTGCGCGTATGCGAAACGAACGTGAAAGAGAATTCCGCGTTCACCGACGCGGTGCCGCGAAGTCAGGAGGCTCTCTCGTGCGTAACGTGCGACTTCCGCTGCAACAAGAGATCCACGATGATCGCGCATCTCGCCGAGAAGCACGAAGGGACCACACGAGCGGACAACGACAGGTTTGCCAGCAACAAGCGCGAGTTCACCTGCATCGTCTGCGGCTTGGTGTGCGCCCGCAAGGAGACCCTGAGGTCGCACTTTGTCCGCAAGCATACCCAGCACTACGGTTACTCGTGCGAGCATTGCGGCAAGGAGTTCAAGATCAAGGGTGACCTCACCACGCACACCCGGTTGAATCATCGGGAAGCACCGGTGATGTGCGACGTCTGCGGCAAAACCTGCCGGAACAGCCACAGTCTCTACACCCATCAGAAACACGCGCATTATAAGGCGAAATACGAGTGCCCGCTGTGCCACCGGCGGCTCGTCACGCAGGAGAATCTGGATCAGCACGTGCTGACGCAGCACGAGAGGAAGGAGAAATCGGTGTGCGAGGAGTGCGGCAAGACCTTCTTCGAGAATCACGACCTGAGGAAGCACATGAGGATCCACACGGGTGACAAACCGTATAACTGCACGGTCTGCGGCAGAGCGTTTGCCAGGCACAGCAGCCTGAGCCAGCACCTTCTTCTGCACACCGGCGAACGTATCTATGCGTGCGATGTATGCGGCAAGTCGTTTGCTCAGAAGGCCGGTCTCATCTGCCACAGGAAGATCCACTCGGGCGTTCTGCCGCCTTTGCCAGTGATACATATCGACCACATACTGAAAGAGTTCATCAAGAAATGA
- Protein Sequence
- MQAWKVVDLEGCLYYAFLPVNQTSKMIEEKNQRDQKRDDEMSKINVDNAENSFAIASDNDLTYMNVLNNVYTVKVENENVFSIDEVAAMDEDQSCNEEDKVYACEECNICFPVMQMLKCHQETVHEQDEKAVESYTENITFSCNFCSYESINKSTLNSHIRRKHPTKRGIRRRSRLRTVIMPQEYSCDLCGFKCPSRRRLREHLDRKHGSEYKYDCEYCGKKFKVKGDMRLHVRFKHKESPIICDVCGKTCSNSNSLYVHQKWAHFKPKYECEICKRRMVTQENLDQHILLQHERRESFMCEECGKSFTEKHRLKQHMMTHTGDRPYDCHICGKAFARRTAYRQHLLIHTGKRPYICDICGKAFTQKPGLICHRKSHPGVHPPLPVVHIDHILNDFMKKEKPTAGIFVDKAVKNETEAETSISERREEKKSQEKDREEKCNSLSCDVCPKRFKSKYLLKRHKLTHAAEIVRVCETNVKENSAFTDAVPRSQEALSCVTCDFRCNKRSTMIAHLAEKHEGTTRADNDRFASNKREFTCIVCGLVCARKETLRSHFVRKHTQHYGYSCEHCGKEFKIKGDLTTHTRLNHREAPVMCDVCGKTCRNSHSLYTHQKHAHYKAKYECPLCHRRLVTQENLDQHVLTQHERKEKSVCEECGKTFFENHDLRKHMRIHTGDKPYNCTVCGRAFARHSSLSQHLLLHTGERIYACDVCGKSFAQKAGLICHRKIHSGVLPPLPVIHIDHILKEFIKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01423082;
- 90% Identity
- -
- 80% Identity
- -