Aash022025.1
Basic Information
- Insect
- Aphaenogaster ashmeadi
- Gene Symbol
- -
- Assembly
- GCA_003063805.1
- Location
- NJRQ01000914.1:16322-20020[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-08 3.8e-05 23.7 0.0 4 37 254 287 251 291 0.87 2 2 5.8 5.2e+03 -2.3 0.1 16 23 343 350 341 351 0.83
Sequence Information
- Coding Sequence
- ATGACCAACAACAAGAAATTCTTTCAAGAACTGAAAAGGATTAATAGGTCAGTTACGGTAGCTAACGGTCAAAAGTTACTAGtagaaggaaaaggaaaaggaatATTAAAGTGTCTCAATCGAAAGGGGAAAGTCACGCAAGTCAAATCAGGGCACACACTGGTGTGTCAGCACACCTGGCATAGAAAGTTTGGTCATCGTCATCAAGAAGCTATACAACGTCTCAGTCAAGGCTTAGCAACAGGGATTATGATCAAAGATTGCGGTATAAAGGCAACTTGTGAATGTTGCATTAAAGGGAAGATGTCTAGGGTACCTTTTCCGAAAGCTTCGGAGTCGAAGACTAAAGCACCCTTGGACTTGTTACACACAGACATTTGCGGGCCTATGCAAGTAAGAACTCCTGGAGGAAAGAGATTTGTCGAAGAAAAAGTTCCTAACGAGCAGTATACTGAAGTTGAATTCACAGAAGGTCCCTCGACACATTTAAGAAGTACTTCTGTATTAAAAGAACAGCAAAGCACGCAAACATCGGCTTGTCAGACAGACATCAAACAGGAGGAGAAAAGTACAACTTCATGTCTACAAGAAGAGGACAAAACAGAGACGAAAGATATTAAAACTATAGACAGTAAGGTCGAAGAAGCAGGTGTAACCAGAAGATCAGAACGGAGAAATAAAGGTCAGCCACCAGAGAGATTCAGAGATATGCTGAACATGGCCAATATGGGGAAATCACGTCATAGGTGGAACGAAAAGAACATAAAAGAAGCTACAGAAAAAGTTCTACTTAATGAAATGACAATTAGGGAAGCGAGTGAAAGATATTCCGTTCCTAAAAGTACACTAGGTGATAGACTTAAAGCTTTTGCAGAAGGTAAAGAGGTAGAAATGAAACCATGTTTGGGAAATGTTAAGGTCTTTCCAAGAACATTCAATGATGGACAGGAAAAGGTCTTATACAATCACATTAAGAGCTTGGATAGCCAGCTTATGCCCTTAAACTTACGGTTAAGGACCGCTGAATCAACAAGCTTGCAGCGCGCAGCAGGTTTCAGCAAGGAACAAGTTGatagattttttgataaactaACTAAACTGATGGACAAGTTTAAGTTCAGTCCTTCAAAGATTTTTAATGCCGATGAAACTGGCGTGACATGTGTCCATACCAACAGACTTAAAGTGATGTCGGTTAAAGGTAAAAAACAAGTAGGGAAGTTGACATCAGCAGAGAGAGGTAGAAATGTCACACTCCTACTGTCCATCAATGCTTCTGGGGACCTGTTTATTCCTCCACTTTTTGTGTTCCCACGTGCAAGATTGGACAATGATTTGAAAAAGGATGCACCGGTAGGAAGTGTTTTTGATGCTCAACCGAATGGATGGATAACTAAAGATGGTTTCCTTAAATGGCTGAAACTTTTTGTGGAACGGGTGAATCCAAGTGAAAAAGATTCTGCCCTACTGATCGTGGATGGTCATGCAAGCCACAAAGACCTTGAAGTAATCACATTTGCGAAACAACACCACATCCACATGCTGAGCTTGCCCCCCCCATACGTCACACAGATTACAGCCACTTGA
- Protein Sequence
- MTNNKKFFQELKRINRSVTVANGQKLLVEGKGKGILKCLNRKGKVTQVKSGHTLVCQHTWHRKFGHRHQEAIQRLSQGLATGIMIKDCGIKATCECCIKGKMSRVPFPKASESKTKAPLDLLHTDICGPMQVRTPGGKRFVEEKVPNEQYTEVEFTEGPSTHLRSTSVLKEQQSTQTSACQTDIKQEEKSTTSCLQEEDKTETKDIKTIDSKVEEAGVTRRSERRNKGQPPERFRDMLNMANMGKSRHRWNEKNIKEATEKVLLNEMTIREASERYSVPKSTLGDRLKAFAEGKEVEMKPCLGNVKVFPRTFNDGQEKVLYNHIKSLDSQLMPLNLRLRTAESTSLQRAAGFSKEQVDRFFDKLTKLMDKFKFSPSKIFNADETGVTCVHTNRLKVMSVKGKKQVGKLTSAERGRNVTLLLSINASGDLFIPPLFVFPRARLDNDLKKDAPVGSVFDAQPNGWITKDGFLKWLKLFVERVNPSEKDSALLIVDGHASHKDLEVITFAKQHHIHMLSLPPPYVTQITAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -