Aash013409.1
Basic Information
- Insect
- Aphaenogaster ashmeadi
- Gene Symbol
- -
- Assembly
- GCA_003063805.1
- Location
- NJRQ01001419.1:23283-26210[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-08 1.3e-05 25.3 0.0 2 37 17 52 16 60 0.88 2 2 6.8 6e+03 -2.5 0.0 22 29 158 165 144 168 0.59
Sequence Information
- Coding Sequence
- ATGGTGAGAAATTACAAGAAGAAAGGGACGAGGAgtgaagaaataaatgaagaaatgatGTCTTCTGCGATCAGAGACGTATTGGATAACAAGTTATCCATTAGGAAATCTGCAGGAAAGTACGGTGTCAAGCCTTCAACTCTAGAAAGCCGCCttacgaaaattcgaaaagaaACTTCTGGTGAGCAGGCGGGTCCTTCTAAACGTATTTTTAGATCTAAATATGCATCCTATCAAGTATTTACAAGCGaagaagaatttctttttaataattacattatcgaTTGCTCGAAAATGCACTATGGACTAACTTGTATACAAGTAAGAAAGCTTGCGTTTGAATATACGAAAGCAAACAACCTGAAATATCCGTCTAGTTGGGATGAATATAAGATGGCAGGAAAGGATTGGTTGCAATGTTTTCGAAAACGCAATAAAAACCTGAGTTTGCGTAAGCCTGAGAACACAAGTGCAGCCAGGTCATTCGGATTCAACAAAACAGCAGTGAATGATTTTTACCAAAACCTTGAAACCATTTATGAAAGATACAAGTTCACAGCAGATCGTATCTATAACTTTGATGAATCTGGTATATCGACTGTATTAAATACGCCAAAAGTATTAGCGGACAGATCTCAGAAGCAGATTGGCCAACTTGTTTCCGCAGAAAGGGGAGAACTCGTAACTTTTGGTGGCATTATATCAGCAAGTGGAAACACAATACCACCCCTGTTTGTGTTTCCTAGAGTTCACTTTAAGGATCACTTTATAGAAGATGTAGTTTTGATATTACCAAGTCCTAAATCAGCTGCTACTACAAGAACAgctaacatttttaatttttccacggatttatctaattataatgtgcattaa
- Protein Sequence
- MVRNYKKKGTRSEEINEEMMSSAIRDVLDNKLSIRKSAGKYGVKPSTLESRLTKIRKETSGEQAGPSKRIFRSKYASYQVFTSEEEFLFNNYIIDCSKMHYGLTCIQVRKLAFEYTKANNLKYPSSWDEYKMAGKDWLQCFRKRNKNLSLRKPENTSAARSFGFNKTAVNDFYQNLETIYERYKFTADRIYNFDESGISTVLNTPKVLADRSQKQIGQLVSAERGELVTFGGIISASGNTIPPLFVFPRVHFKDHFIEDVVLILPSPKSAATTRTANIFNFSTDLSNYNVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -