Aash000139.1
Basic Information
- Insect
- Aphaenogaster ashmeadi
- Gene Symbol
- -
- Assembly
- GCA_003063805.1
- Location
- NJRQ01000811.1:58918-60879[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.1e-10 2.7e-07 30.6 0.0 4 38 18 52 16 56 0.93
Sequence Information
- Coding Sequence
- ATGGttcgaaattataaaagaaaaactgaCAGGCAGACGTGGAATAAACAGTCGATGGATAGTGCTGTATCTGCTGTCATCGAGGAAAAAATGGGTTATCGTAAAGCTTCTCTTAACTATAAAGTTCCCAAAACGACTTTAGAACGACATGTTAACAAAATGAAGAACAATTGTGACAAAGTACTCGAAGTTGCAAAACCAGGCGCTTTTAAAGCAGTGTTTACCGAAGAACAAGAAAAGGAACTTTATGAATATGTGGTTAACATGGAACAAAGACTTTTTGGCTTAACTTCCGCAGAACTGAGGTCATTGGCTTTTCAACTGGCCgagagaaataatttcaacaatCCTTTCAACAAAGAAACTAAATTAGCTGGTATAGATTGGCTAAATGGATTTATGCAGCGACATCCAAACATTTCATACAGAAAACCTGAAGCAACATCTGCTGCTAGAGCCATGGGCTTCAATAAAGTTTCAGTGGGAAAATTTTTCGACCTATTAAACAATATCGTTGAGACAACAAATATAACGGCGGAAAGAGTATATAATGTTGACGAGACAGGTGTAACAATTAATCCAAAGCATCATTCTCGAATACTGGCTCAGAAAGGCCGTCGACAGgtGGGAACAGTAACATCTGCTGAACGAGGGGAAACAGTCACAGCTGTAGTTTGCGTATCTGCCGCAGGAACTTATATGCCACCTATGTTGATATTTCCAAGAAAGCGAATGCGAGAAGAATTCGAAACTGGTTTATCCCCAGGATCATGGGCTGAAGTTCATCCTTCTGGATGGATAAATAAAAGTCTTTTTTTATCCTGGTTCAATAAATTCATAGATTTTGCAAAACCTTCGAAAACGTCTCCTGTGTTGCTTCTCTTTGACGGACATAGAAGCCATACTACAAACCTTGATGTTATTGATCTAGCTAGAGAAAAGGGTGTCATATTATTGTGTTTTCCACCACATTGTTCCCATCGTCTTCAGCCTTTAGACGTATCTTTTTTCAGACCACTTAGTAAATATTACGAAGATGCAGTAAGAAGATGGCTACGAAACCATCCTGGGAAAATAGTAACGCTGTTTCACATAGCAGCTTTATTTGGTGAAGCATTTATTCAATCTGCAAACATGTTAACGGCAATCAATGGATTTAAAAAGAGTGGTGCTTGGCCAGTCAACATGAATGTATTTACTGAAGCTGATTTTTTGCCAGCAGATCCTACCGACATTGATCTTTCAGAAAATAAGGAAAATGATTATATCCAGAATGATGCAAAAGAAGGAAATTGTCCTGAAATGTTAATCATGGATACAATTCAACCAGATAAATCGATAGATCAACCAGAAACATCTACAGATCAACCAGGAACATCTACAGATCAACCAGGAACATCTACAGATTGCAATGTTTCTACATTTGCTACATGTTCACCACTCATTATTCAGCCATTGCCAAAAGTTGCTCAAGGTAAAAAACGTGTAAGTCGAAACAGAGGAAAAGCCGCTATTTTAACTATCTCGCCATACAAGGCACAGCTGATGGAAGctgttgaaaaaataaataagaaagacCTTTGTAAAAAACGGTTAAAAGTTTCAGAATGTGATGcgcagaagaaaaaaatgccaAAAAGAATCTCAATAACAAAAAAACCCAACAGAAAAGACGAacatataaaaaggaaaataaatccAGCGACTCATCTTTTAAAGGAAATACAAGTGACGATGCTCAGTGTCTCTATTGTCACGAATTGTATTCAACGTCAAATGAAGGATGGATAA
- Protein Sequence
- MVRNYKRKTDRQTWNKQSMDSAVSAVIEEKMGYRKASLNYKVPKTTLERHVNKMKNNCDKVLEVAKPGAFKAVFTEEQEKELYEYVVNMEQRLFGLTSAELRSLAFQLAERNNFNNPFNKETKLAGIDWLNGFMQRHPNISYRKPEATSAARAMGFNKVSVGKFFDLLNNIVETTNITAERVYNVDETGVTINPKHHSRILAQKGRRQVGTVTSAERGETVTAVVCVSAAGTYMPPMLIFPRKRMREEFETGLSPGSWAEVHPSGWINKSLFLSWFNKFIDFAKPSKTSPVLLLFDGHRSHTTNLDVIDLAREKGVILLCFPPHCSHRLQPLDVSFFRPLSKYYEDAVRRWLRNHPGKIVTLFHIAALFGEAFIQSANMLTAINGFKKSGAWPVNMNVFTEADFLPADPTDIDLSENKENDYIQNDAKEGNCPEMLIMDTIQPDKSIDQPETSTDQPGTSTDQPGTSTDCNVSTFATCSPLIIQPLPKVAQGKKRVSRNRGKAAILTISPYKAQLMEAVEKINKKDLCKKRLKVSECDAQKKKMPKRISITKKPNRKDEHIKRKINPATHLLKEIQVTMLSVSIVTNCIQRQMKDG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00125831; iTF_00129654; iTF_00128887; iTF_00126623; iTF_00128106; iTF_00127367; iTF_00128112; iTF_00128885;
- 90% Identity
- iTF_00128885;
- 80% Identity
- -