Aash000239.1
Basic Information
- Insect
- Aphaenogaster ashmeadi
- Gene Symbol
- -
- Assembly
- GCA_003063805.1
- Location
- NJRQ01003083.1:3693-4256[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-11 1.2e-08 35.0 0.0 1 41 13 53 13 55 0.90 2 2 9.5 8.4e+03 -3.0 0.0 17 23 137 143 135 143 0.80
Sequence Information
- Coding Sequence
- ATGGCATCAAAGACcaaaaatgtgtataaaaaGTACACTCCAGAGCGTATGAAAAAAGCCCTGGACGACATTCagtcaaaaaaattatcaattcgTGCAGCCAGTAAGTTTTACAAGGTGCCTTTTACAACTCTACTAGCGAAACATCAGGGTAAATATCCGATAGATGCCAGACCAGGTCCTGCGACAATTCTCACTTCAGAAGAGGAAAATGCATTGGTTGAGTGGATTCTGCATATGAGTGTAACTGGCTTCTGCATTACAAAGGAACAGCTGTTGAACAGTGTCCAGAAACTAGTCAAAGATTTAAAACGAGAAACACCATTTACAGATGGTAGACCTTCAAAGCGATGGTACCAATCTTTTCTCAATCGTCATCCACAAGTGTCGCTGAAGTTAGCACAAAATTTATCCCTTAGGAGAGCTCAACTGTCAGAGGAGGATATCCGTAAGTGGTTTCAAGGCATAAAGGTGTATttagaatctaaaaatttgttgaatatCAGTGGTTCGAGGGTGTTCAACTGTGATGAATCGGCTTTTTTTACTGAATCCGAAATCTAA
- Protein Sequence
- MASKTKNVYKKYTPERMKKALDDIQSKKLSIRAASKFYKVPFTTLLAKHQGKYPIDARPGPATILTSEEENALVEWILHMSVTGFCITKEQLLNSVQKLVKDLKRETPFTDGRPSKRWYQSFLNRHPQVSLKLAQNLSLRRAQLSEEDIRKWFQGIKVYLESKNLLNISGSRVFNCDESAFFTESEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -