Asyr020610.1
Basic Information
- Insect
- Apeira syringaria
- Gene Symbol
- -
- Assembly
- GCA_934045895.1
- Location
- CAKOGY010000333.1:930169-936846[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.084 7 7.8 0.3 1 23 217 239 217 239 0.98 2 11 3.3e-06 0.00027 21.6 5.3 1 23 245 268 245 268 0.97 3 11 0.086 7.1 7.7 0.4 1 23 285 307 285 307 0.97 4 11 1.9e-05 0.0016 19.2 3.0 1 23 517 539 517 539 0.98 5 11 0.0048 0.4 11.7 3.4 2 23 545 567 544 567 0.96 6 11 0.14 12 7.0 5.4 2 19 576 593 575 596 0.85 7 11 3.5 2.9e+02 2.7 2.3 1 23 635 658 635 658 0.94 8 11 0.0012 0.1 13.5 1.3 3 23 666 686 664 686 0.97 9 11 0.00016 0.013 16.3 1.6 2 23 693 714 693 714 0.98 10 11 5.3 4.4e+02 2.1 6.1 1 23 720 743 720 743 0.94 11 11 2.1 1.8e+02 3.3 6.5 1 23 747 770 747 770 0.94
Sequence Information
- Coding Sequence
- ATGGATGTAACTTTTGGCAGTACAAATAGAAACAAATTTGTTAAAACATATTCAAAACGAGACCAAACAGCTAAAATACCTGTCCAAGATTATGAAGCAACAATATCCAAGGTTGAATTACCTTTACCGGACATTATAAAGAGAGAACCGCTGACAACAAGAAACGCAGTGAAATTTTTGCTTGAAGGAGGCTTGAAGAATAAAGTTTGTAGATACTGCCTACATGTAGCACCTCATCTCTCAGAATTAGATCTAATTTTGCAAGTGGCTGACAATGGAACTGTTTACAAAGTGTCTATTAAGGATATGGTTGCTAGTTTTCATCCTTTTAAGGTAGCTGATGACCCAAACTGGCCAAAAAAAATATGTGGCAAGTGTGTAGACAGCACCATCAGCTCATATCTTTTCACTCAGCAGTGTGAACGAGCTGAAAGAGCTCTCCGTAATTGCTTTGATGATGTTTATGAAAAATTTGACAAGTTGGACCCTTTAGATACACCTAAGCACAAACGTGGTAAACGAAAACTCAATCCAAACTTCAACATTTTATATGCAGAATATAATAAGATTATTGACTATGCTGATCCCATAATACACATAGTCAATACAACAACTGAGACATTGACCTATCAACCAGATATTCAAGAATTTGAATGTCTCAAATGTTCTGAAGTTCTACCAAATATGATGTCATTGTTAAATCACTCAAAAACTCACCCTAAATCTATGTGGTATAACTGCAGATTATGTGGCAAATCATTCCCAAAATGTCACAATTTAAAAAAGCATATGCGTGTTGAACATTCATCAAAGGATGTACAAGAAACTACACAGATGAAAGAAATTGTAAAATATGATTGTAAAAGATGTGGATTAGTAATAGAGAAATATTATGAATATTTGCAGCATATTGAAAAGCATAAATTCAAAATGGTCCTGGAGCATTTAGTGGATAAAAATATGGATGAACTTTGTGCTGTTTGTTTGAACAAAGAGGGCAATATGGTGACATTAGATAAAACAATTACCTTGCACGGCGGTTGTCCAGAACTGACGGGAGATAGACACTTGTATAAAATGTTGGCTTCAACACTTTCAGAGATGAACTTGTTAGATTACATTGGCACCAAAATATGTAAAAAATGCCTCGATCACGCTATCACATCGTACGTTTTTATCAACCATGCATATTTCGTTAGGAAAAGATTAAGCACATGTGTCAGTGCAATGTTGGATAATTTGAGTAAGTTATCAGAAACTAAAAACAATATTTGCGTAGAAATATCTCCAAATGCAATTATGAATGTTGTTGAACCTTTTGAAGATAGCTTCAAACCAGAGGATGATATAGACGAATCAAAATCGAATGTTGAAGTATTAGAAGATGAGTTCAGATTGAAATCAGAAGATGAAAACGATGCAGAATCTGAGAAACTTAAAGTTAATATTAAAGAAGCTTCAAAGTATATAGGAAATAGTCTTGTGAATGGCTACAAACTTCAAGACTCCAAATTATTCGTTTGCAAAAGGAATAAAGTTAAAATTAAGTTTACATGTCCCATTTGTAATAAGCACTTTATTTCTGATTATTTCTTAAAACGGCACATTTTGAAACACAAACCGAAAAAAGTTGAATGTAATATTTGCAATTTCCAATTCAAATCAAAGTTCGAACTGTATGAGCACAAGAAAATGTGTCATTTTATGAATAAAAGCTTATATTTGTCTTGCAAGATTTGTGGCCGCTGTTACAGCAATAAGAAAAACATTAAGTGTCATGTGAAACATAAAAAATATCAGTGCTGCCAGTTGTGTGACAAAACTTTCAAATGTGAAAAGTATTACATTGCCCATTTCCATAAACATATGAGGAAATTGGGCGTCATTATGAGAAAATATTCGCACAATTGCGGCTTTTGCGAAAAAGACTGTCCGAACGATAATGAATTCTCTCTACACGTGAATAAAGTTCATTTAAAAATTAAACCGTACGGTTGCGACATGTGCGAAAAGTATTTTTACACGGAGAAAAATTTAAAAGATCATAAAAAACTACACAGTGTTCGTAGCAAAGAAAAATGCAATTTCTGTGATAAAATACTAAAGTCTAGAAAACAATTGGTAATTCATATAAGAAAACATATTGGGGATAAGCCGTTTTCATGTCAGATTTGTTGCAAATCTTTCTACTCAGAACATAAAATGGGGGTACATATGATTGAGTGTCACGGAGGTAGATTTTGCTGTAAATTTTGCAAAAGTACATATTGTAATAAAAGACGACTAATAGAACATGTGAAAGAGGCACATAATTGTTTATTTTAG
- Protein Sequence
- MDVTFGSTNRNKFVKTYSKRDQTAKIPVQDYEATISKVELPLPDIIKREPLTTRNAVKFLLEGGLKNKVCRYCLHVAPHLSELDLILQVADNGTVYKVSIKDMVASFHPFKVADDPNWPKKICGKCVDSTISSYLFTQQCERAERALRNCFDDVYEKFDKLDPLDTPKHKRGKRKLNPNFNILYAEYNKIIDYADPIIHIVNTTTETLTYQPDIQEFECLKCSEVLPNMMSLLNHSKTHPKSMWYNCRLCGKSFPKCHNLKKHMRVEHSSKDVQETTQMKEIVKYDCKRCGLVIEKYYEYLQHIEKHKFKMVLEHLVDKNMDELCAVCLNKEGNMVTLDKTITLHGGCPELTGDRHLYKMLASTLSEMNLLDYIGTKICKKCLDHAITSYVFINHAYFVRKRLSTCVSAMLDNLSKLSETKNNICVEISPNAIMNVVEPFEDSFKPEDDIDESKSNVEVLEDEFRLKSEDENDAESEKLKVNIKEASKYIGNSLVNGYKLQDSKLFVCKRNKVKIKFTCPICNKHFISDYFLKRHILKHKPKKVECNICNFQFKSKFELYEHKKMCHFMNKSLYLSCKICGRCYSNKKNIKCHVKHKKYQCCQLCDKTFKCEKYYIAHFHKHMRKLGVIMRKYSHNCGFCEKDCPNDNEFSLHVNKVHLKIKPYGCDMCEKYFYTEKNLKDHKKLHSVRSKEKCNFCDKILKSRKQLVIHIRKHIGDKPFSCQICCKSFYSEHKMGVHMIECHGGRFCCKFCKSTYCNKRRLIEHVKEAHNCLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -