Asyr003226.1
Basic Information
- Insect
- Apeira syringaria
- Gene Symbol
- -
- Assembly
- GCA_934045895.1
- Location
- CAKOGY010000028.1:1002855-1024708[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.094 7.8 7.6 0.7 2 23 431 452 430 452 0.93 2 11 0.032 2.7 9.1 0.0 1 23 462 485 462 485 0.95 3 11 0.39 32 5.7 2.2 1 20 555 574 555 576 0.87 4 11 0.019 1.5 9.8 2.9 2 23 633 654 632 654 0.95 5 11 1.2 97 4.2 1.9 1 23 665 689 665 689 0.88 6 11 0.00032 0.026 15.4 0.5 2 23 696 719 695 719 0.96 7 11 0.0046 0.38 11.7 0.2 1 23 725 747 725 747 0.93 8 11 0.002 0.16 12.9 0.3 1 23 753 775 753 775 0.98 9 11 0.31 25 6.0 0.2 3 21 787 805 786 806 0.91 10 11 0.039 3.3 8.8 0.1 1 23 888 910 888 910 0.97 11 11 1.3 1.1e+02 4.0 7.2 1 23 917 939 917 939 0.95
Sequence Information
- Coding Sequence
- ATGACACCATTCTACTTTCTAAAGCTAACACAGCTTTATGCCGCTCTAGGCTACGAGATCGACATCACATCCCTCACCAGAGACAAACCAGTAGACCTCAACGAAAATGTATACCAGTTCCTCCTAAACCTTGAACGGGAACACCCAGACATGGTCCAAACGTTGGACGAAATCAACCCTAACTGTGACGAAGAATATGTCCTAGACGATGGCACAGAAATCAAAGCATCTCAAATACATTTTGATAACGAAGATGCTCATACAGATTTGACTCTAGAAAAACTACCGTTCGTCAAACTAAATAATGACGAAGAGGATGAAGTTGAAAATTTAAATTATGAAGAGGTTACGTATAAAATACCAGCAAGTCCTATTAGCAGTGACAAAGCCAGTCCACGAAACAACTGCATTAACGGTATACCTTTTAAACTAGTATGCAATAACACGACAGGCTTCGAAGCTCAATTCACAAGATATCTTGAAGAAAGCACTAAGACATATGCCATTTTAAACAATGTGACCAAAAAGAACAAATCTCCAAGAAGTTTGATCAAAGATAATTTTAACACTAAAGAAGATTTTCGTTACACAAGAGAAGAAATACTTAATATTCTCAAAGATTCCCCAGTTACTAGTATACCTTATGAAGTGACTGAAAAAAAACATGTCAGGAAGACTGATCCAACAAGATTGATCCAAAAGAGTTCAACGAAAGCGGTAGATATTAATGGGCTTGTGATAGCCGATGGGGAGAATAGGAATTGTTTTATATGCGACAAAGTTGTTGTTGAAAAACTATATATTTTTGATAAGGAAGATCAGAAAATGCATCGATGTTCCCCGCAAAAGATCACATCGTCACAATTGAAGGTGATTTGCGATGAGTGCCTTAATGAAAACTTTAAGCCTTCACGAATGAAAAGCGCCAATCAATTCCTGACCTCTGAGGAGTACCTAGTCATAAAGAATAATCACCAGTACATATTTCAAAAGACGAAAGATTTCCAAATTAAAGTTTTTGAAACTAAGAAATCGGAATGTAAAAATAAGGATGAATATGTGAAAATGGAAATTGGTTCTGACGGTGAAATAGTGACAAAGCCCATAGACAACGATGATGATGTTATAATTGTTAATGATGAAAAGAAGGAGATTTCCAGTGATCTGGAGATAGTGGAAGCGGAACCGGAAATGGACAAGATTATAGACAATTTGGAGGAAGCTGATGAGGAGGTGAAGAAGTTTTTGGGGAAGTACGAAGATGACGGAAACAGTGAACTTAAGGAGTTAAAGTGCAGGTTTTGCGAGCATGTCTTCACGTCGACATCAGAAGTGGCAAGTCACGGCGAGATACATAAGCATACTATGGAAGATGACATCGTATATCCTTGCCCGCTCTGTGATTATGGTTATGCGGAAGTTAAATGGTTAAAAGGGCACATAAAGGCGGCGCACGAAAAGAAATTCACAGATGTCACAATTGAACCAAAAAAAGATGCAGAAGCCGAAACAGAAAACGAGGGTAAAACTTCAATCGAAACTAAAGTATCTAACGAAGTTGACAGATGCAAACCAGAAAAATCTGAGAAGAATAATGATACGGACCGGAGACACTGTAACACTGACACGCCGGGAAAAACTGAAGAGAAAGTCAAGAAAGGCCACAAGTGCAATGATTGCAGCCAATTCTTCCCGACCCCGGCGATTCTCTCTTCACATAAATGCAGACGACGCGGTCTAAAGCCAAAATCAGCCGAAGAAAATCTAATTTGTATACCAACCAAAGAAGATTTTATTAGAAGAGCTCGTGGGAGACCACGACAAGTCTTCGAATCAGAGAACGACGATAATATTGAAAGCGCAGCCAAGAAAGCAAAAGAACAGTCCGAAATCGTGATGTGCAACGAATGTGATCACTCCTTCACGTCCAAAGTGAGGCTCAAATTCCACATGCAATTTCACACATCTAGTACAGCTGTCTCACCCGAAGGTTACAAATGTTCCCAATGCGATGAAAACACGTTTCCGACGGAAACGGAACTGTTCGACCACGTACACTTCCGCCACGATAAGCGGAAACGTTGGCAATGTCCGGTGCCCAACTGCCAGAAGACTTTCTACCTTAGGGCGACGTTGACAAAGCACAGCCGTACGCACACAGACACGCGGCGCTACGTGTGTCCCACGTGTGGGAAACGGTTCCTCGACAAACAGACTCTGGACGAACATGGCGTCACCCATTTACAGATAAAGCCATACCAGTGCCCCATCTGCCTGAAGCAGCTGACGCGCGTGTCGCGGCTGCGCATGCACGTGCGCGCGCACCGCGAGCGCGCCGCGCCCGCGCGCCTCCCCGCCTGCGCGCATTGCCGCCGCGCCTTCCGCCATGCGCCCGACGCGCAGGAGCATGTGATGAAGTCCATAGAATGCGTGGAAGCTTTTAGAAATCCCAAATTGAACGAGAACGAGGAGAACGATGAGCCAGTCGTCCAACTGTCGCCCACTAGTGGACTTGTCAGGCACACCGTGCAGGTTATCGAATCTCCGAAACGTTTGAAGAGTATACCGCGTCAAGTGGCGTCTCCAATTGCTGCGCCACTTTTGAGCAAGCTCTCTGACGAAGTTAAGTCGGTCATACGTATTGTAGAGATTGACAAGGCGTTCCGCTGCGAATATTGCGAGGACGTGTTCTACATAGAAGAAGGTCTGAACCGTCACCGAGCCGTACACAAAGATGTCAAGAATCCATTCACATGTCACATATGTAAAGTTAGCTTCGCTACATATTCCAGATGTACAACCCACAAAACGACCCACGGCCTCTACAAACGCGGTGCGGAAGCTCGCGCGATTCCGGACTTCCCCGTCGTCAAGCATTTCCTGTGCGAGTGGTTCAGGTCCGAGCGGCGACAAGAGCGTAGAACTCTCCTTCGCGGCGTCTTCTCTGATACTGAGCCTGAACCACTGAAGATGTCGACCGCAGTGATCGACGAAACGTCTTGA
- Protein Sequence
- MTPFYFLKLTQLYAALGYEIDITSLTRDKPVDLNENVYQFLLNLEREHPDMVQTLDEINPNCDEEYVLDDGTEIKASQIHFDNEDAHTDLTLEKLPFVKLNNDEEDEVENLNYEEVTYKIPASPISSDKASPRNNCINGIPFKLVCNNTTGFEAQFTRYLEESTKTYAILNNVTKKNKSPRSLIKDNFNTKEDFRYTREEILNILKDSPVTSIPYEVTEKKHVRKTDPTRLIQKSSTKAVDINGLVIADGENRNCFICDKVVVEKLYIFDKEDQKMHRCSPQKITSSQLKVICDECLNENFKPSRMKSANQFLTSEEYLVIKNNHQYIFQKTKDFQIKVFETKKSECKNKDEYVKMEIGSDGEIVTKPIDNDDDVIIVNDEKKEISSDLEIVEAEPEMDKIIDNLEEADEEVKKFLGKYEDDGNSELKELKCRFCEHVFTSTSEVASHGEIHKHTMEDDIVYPCPLCDYGYAEVKWLKGHIKAAHEKKFTDVTIEPKKDAEAETENEGKTSIETKVSNEVDRCKPEKSEKNNDTDRRHCNTDTPGKTEEKVKKGHKCNDCSQFFPTPAILSSHKCRRRGLKPKSAEENLICIPTKEDFIRRARGRPRQVFESENDDNIESAAKKAKEQSEIVMCNECDHSFTSKVRLKFHMQFHTSSTAVSPEGYKCSQCDENTFPTETELFDHVHFRHDKRKRWQCPVPNCQKTFYLRATLTKHSRTHTDTRRYVCPTCGKRFLDKQTLDEHGVTHLQIKPYQCPICLKQLTRVSRLRMHVRAHRERAAPARLPACAHCRRAFRHAPDAQEHVMKSIECVEAFRNPKLNENEENDEPVVQLSPTSGLVRHTVQVIESPKRLKSIPRQVASPIAAPLLSKLSDEVKSVIRIVEIDKAFRCEYCEDVFYIEEGLNRHRAVHKDVKNPFTCHICKVSFATYSRCTTHKTTHGLYKRGAEARAIPDFPVVKHFLCEWFRSERRQERRTLLRGVFSDTEPEPLKMSTAVIDETS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -