Asyr009812.1
Basic Information
- Insect
- Apeira syringaria
- Gene Symbol
- -
- Assembly
- GCA_934045895.1
- Location
- CAKOGY010000109.1:1822330-1837439[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.013 1.1 10.3 2.6 5 23 304 322 295 322 0.89 2 12 0.55 46 5.2 3.9 1 23 330 353 330 353 0.89 3 12 5.9 4.9e+02 2.0 0.3 1 21 357 377 357 380 0.79 4 12 0.0053 0.44 11.5 2.2 1 23 457 479 457 479 0.98 5 12 0.073 6 8.0 7.2 1 23 487 510 487 510 0.97 6 12 0.0007 0.058 14.3 0.4 1 23 514 536 514 536 0.98 7 12 0.00048 0.04 14.8 3.2 1 23 541 564 541 564 0.95 8 12 0.16 13 6.9 4.5 3 23 570 591 568 591 0.92 9 12 0.37 31 5.7 0.1 2 21 613 632 612 637 0.91 10 12 1.5e-05 0.0012 19.6 0.9 1 23 730 752 730 752 0.98 11 12 0.00062 0.052 14.5 0.8 3 23 760 780 758 780 0.96 12 12 5.3e-05 0.0044 17.8 2.7 1 23 786 809 786 809 0.98
Sequence Information
- Coding Sequence
- ATGTTGGATATAGAGGCGTGCACCGTCTGCTTTAGCAATGGTGTGAAACTGTATAGTTTGAACGTTGGAAGCCTAAGAAAGGAGTTTATCTCTGTTTCGGGAATTCAGGGTGTTCAAAGAAATGGGATGCCTAATTATTTATGCATGGAATGTTCAGCATATGTGAAAAAGTTTTTAAAGTTTCGCCAAAAATGTCACCGGGCACATTATACATTGAAGCAAATGTTGGCAAGAAATGGAGAGATTACATTGACTGACTTGAAAGCACTGAATCGTCAACGACTATTGTTAATGCCTTCTTTATCCTACATTAACCATGAAAAAAGTCATTATGAACAAATTGAATACAAATTGGTTAATTACTCTCGCACTAAAATCTGTCAACTGGGAGTTATTCCAGTTGTCCACATCAGCACACTCACAAAAGAAGACACCTTTGAACTAGAAATGAACGAAATTAAAGAGGTTACAAATAATAAAATTGATAATCATGTTAAGATCGAGCTAGATCAAGCTATACAAATGGATATGAATGGATTTACAGATAAAATTCCAAGTTTACTGCAAGAAGTTTTGACTGGTGGTCACATGCCATCAAGTGAAACTAGTGACACTTTTGGAAACACTGTGCTAGCAAAAAATGAACCTTTAAATGCTGATCTTCACATGCAAGAGGTACAAAATGATTTTAATGATGAGCAGAATGATTATCCATTTGATGATGGAAATATTAATGATACAAGTGATGCTGAAGATGATAGTTTTAGGATTCGTTCTTGTAAATTAAATAACAAAGTTGATGGTTCTAGTCTTAATGAAGAGTATGGAAAGGTTGTGCCTATTTCTGTGAAGGAAGCAAAAGCAGTTGTGGCTGTTGGTAAATTCTTTTGTGTTGGGAAATTTCAATGTAAATGTGGAAAGAGATTTGGTAGTGAGAGCACTATGAAACAGCATGCTCGAAGACATGATATGCATGTAAGTGGACGTTTTCACTGTGAAATCTGTGACTACTACTTCAAAACCGCATTTGTCCTAGAATGTCATATGTCTGAAAAGCACATGTACAAGTATTTGTGTAAAAAGTGTCCTGAAGTTTCATTTTCGAGAATAGCAGCCAAGCAACATTATGTATGGAAACACATGCAAAATGGGAAAATACATGAAGAAGGAATTAAATGGGAAGTACTAAAGAAGCCATCTTGGCTGGGAAATAAGGGAGGCGTACGAATTAAGGGTTCGATTAGACCAAGAGAGAAAAAGAAGAGGTCGCTCCCCAAAGACTTCCCGGTCTATTCTCCCATATCTCAAGAAGAACAGTACCTGATGGTCGAGCGACGCAAGGAGTCCCGCAACTACTTGGAAGCTAAGTTCAAGTGCGAATTGTGTTATCGCGGCTATCGACTCACCAGCACATACAACAAACACATGGCTAAACATGATCCGAAAAAGTCCGGCATCCATCAGTGTGACATGTGCAAGCATTATTTCCGTGACACACGGAAACTCTACAAGCATCTAAATATGTACCACTTGTTCAAGTATTCGTGTCGATACTGTGACAACGTTTTCACGAACAGGGGCCAAGCGTGGATACATTATAGGTGGCACAAGAATGTTACCTATGACTGTCCGCATTGTGATAAGACTTTCACGAAAATTTCGACGCAGCTAACTCACATAAGATTTAAGCACCCATCCACGGATATTTGCAACCTATGCGGACACAGCTTCGTTAGTTCCAGCGGCCTGCATTGTCATAAGCAAATGTCACATAGTAAAGAGGAGATGGAAGTAAGCAGTGCAATAACGGCCGAGGCCGACCCGTCGTCCCTTCTGTACTGCGGCGAGTGCAACATTCAGTTCGTGGACGAGCTCGCGTTCACCACGCATCTCAGCAGCTCCCGCGCGCACGTTGCTACTAACCTCGCTGTTATCAAACATGAGCGCTCAAATCGTCGGACGGAGCGACTCGAAGCGAAAGGTCTGGATCCTAACGAACCGTCATCGAAACAGGCTGGACCTCGGGGCCGCCCTCGGGGCCCAGGCTCTCGTGGAAGCTCCGAAGTTTTGAACACTGGGACCACTACTGCTACCAACTGTGAAGTGTGCGGGCTATACCTACCAAGCGACGTGGTGGCGCGCAAGCATTACGAGGCGGAGCACCCCGGGACGGACTACTTGAAGCGGTACATGTGCGAGCTCTGCGGACATACCACCAAGCAATATGCAAACCTCCTGGTCCACATGAGGGTACATACGTTGGAGAAACCCTACGGATGTCCACATTGTGATAGAAGATTCAGCATGCCGAGCAACAGAGACAGACATTTAGTTGTACATACAGGCGAGAAGCGTTACCAATGCCAACACTGCAGTCGCCGCTTCACTCAGAGCACTGCGGTTAAACTGCACATACAAACCGTACATATGAAGATACCCTACAAGCCGTGGGACAAGAAGAACCGCAAGCGACGCAAAGAGATGGAGCCCAATACTGCCGGTATGGGGATGGTGGTGCCTTCGACGGTGACAAGTGCGGCGGCCGTGGGTTCCGCTCTGCAACATAAGGTGGTGGTAGAAAGGACCGCGACACCGGGAGACTACATACATTACATCAGCTATGCCGATGAACAGTGA
- Protein Sequence
- MLDIEACTVCFSNGVKLYSLNVGSLRKEFISVSGIQGVQRNGMPNYLCMECSAYVKKFLKFRQKCHRAHYTLKQMLARNGEITLTDLKALNRQRLLLMPSLSYINHEKSHYEQIEYKLVNYSRTKICQLGVIPVVHISTLTKEDTFELEMNEIKEVTNNKIDNHVKIELDQAIQMDMNGFTDKIPSLLQEVLTGGHMPSSETSDTFGNTVLAKNEPLNADLHMQEVQNDFNDEQNDYPFDDGNINDTSDAEDDSFRIRSCKLNNKVDGSSLNEEYGKVVPISVKEAKAVVAVGKFFCVGKFQCKCGKRFGSESTMKQHARRHDMHVSGRFHCEICDYYFKTAFVLECHMSEKHMYKYLCKKCPEVSFSRIAAKQHYVWKHMQNGKIHEEGIKWEVLKKPSWLGNKGGVRIKGSIRPREKKKRSLPKDFPVYSPISQEEQYLMVERRKESRNYLEAKFKCELCYRGYRLTSTYNKHMAKHDPKKSGIHQCDMCKHYFRDTRKLYKHLNMYHLFKYSCRYCDNVFTNRGQAWIHYRWHKNVTYDCPHCDKTFTKISTQLTHIRFKHPSTDICNLCGHSFVSSSGLHCHKQMSHSKEEMEVSSAITAEADPSSLLYCGECNIQFVDELAFTTHLSSSRAHVATNLAVIKHERSNRRTERLEAKGLDPNEPSSKQAGPRGRPRGPGSRGSSEVLNTGTTTATNCEVCGLYLPSDVVARKHYEAEHPGTDYLKRYMCELCGHTTKQYANLLVHMRVHTLEKPYGCPHCDRRFSMPSNRDRHLVVHTGEKRYQCQHCSRRFTQSTAVKLHIQTVHMKIPYKPWDKKNRKRRKEMEPNTAGMGMVVPSTVTSAAAVGSALQHKVVVERTATPGDYIHYISYADEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -