Basic Information

Insect: Apeira syringaria
Gene Symbol: -
Assembly: GCA_934045895.1
Location: CAKOGY010000085.1:693766-700850[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0011 0.095 13.6 7.6 1 23 292 314 292 314 0.98

2 11 0.043 3.6 8.7 4.7 2 19 328 345 327 349 0.90

3 11 5.8e-06 0.00048 20.9 0.4 2 23 355 376 354 376 0.97

4 11 0.00036 0.03 15.2 0.1 1 23 380 403 380 403 0.97

5 11 0.87 73 4.6 0.4 2 23 407 430 406 430 0.94

6 11 1.2e-05 0.001 19.8 0.8 2 23 565 586 564 586 0.96

7 11 0.1 8.6 7.5 0.5 3 23 607 628 606 628 0.97

8 11 5.2e-07 4.3e-05 24.2 4.6 1 23 634 656 634 656 0.99

9 11 0.078 6.5 7.9 5.5 1 23 661 683 661 683 0.97

10 11 0.0029 0.24 12.3 7.3 2 23 690 712 689 712 0.95

11 11 0.2 17 6.5 2.9 3 19 750 766 748 771 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0011	0.095	13.6	7.6	1	23	292	314	292	314	0.98
2	11	0.043	3.6	8.7	4.7	2	19	328	345	327	349	0.90
3	11	5.8e-06	0.00048	20.9	0.4	2	23	355	376	354	376	0.97
4	11	0.00036	0.03	15.2	0.1	1	23	380	403	380	403	0.97
5	11	0.87	73	4.6	0.4	2	23	407	430	406	430	0.94
6	11	1.2e-05	0.001	19.8	0.8	2	23	565	586	564	586	0.96
7	11	0.1	8.6	7.5	0.5	3	23	607	628	606	628	0.97
8	11	5.2e-07	4.3e-05	24.2	4.6	1	23	634	656	634	656	0.99
9	11	0.078	6.5	7.9	5.5	1	23	661	683	661	683	0.97
10	11	0.0029	0.24	12.3	7.3	2	23	690	712	689	712	0.95
11	11	0.2	17	6.5	2.9	3	19	750	766	748	771	0.92

Sequence Information

Coding Sequence: ATGGATCTCGAAGATGTTCTGTATTCCAATCTGGTATATCCCATCCTTCTTATGCCGAAATCATGCACAACACTGGATACAGACTTTGACAAGTCTAATGATGTTTATATTGAAGTGAAGATCACAACACCAGACACCGCAGGAAACTTAACATGTATTTATGCTGGTTTATGCAAGATAAAACTTTTTGAGACGGAGGAAAATCAGAACTGCATCAAATCACCCCAAAATGATATATCTAGTTTGTCTATGAATAATATTGATGTAGACCAACTCCCTATCATCTTTTCTGAAACCAGCCCACCTGCATTCTCGACATACAACCAGTCTGAAGTCTGGATAGATCCATGCCGAAGCCCTTTCGTTTACAATCGTTGTGAATCACCATCACAGGAGGAATGTTTCATAAGACAGTCTAAAGGCCAAATAACTGTAAATAAACACAATACATACATAACTCAAAATGTCTACAACTATAATGAGGCTGATATATTAACTAATAAAGAACAACAACAATTGATTGATGATTCTGATCAAAACATATATGAGAATGATGACTTTAATTGTGAAACATATCTGTCAATCTTAGCTGAAGAAACTTTGAATGAAGAGCACAATAGAACACGAGAAGATCATAGCTTAATAAGACCAAACGTTGAGAACAATGCTTTAAAGCAACTAATGTCAGAAGATATACAGCCTATCTCAAAACAACAGAAGGTTATACTGTTTTCAGGAAATGACTCTGAATCAGGCCATACTATTCAAAACATATCCTACAGTGATCCACTTGTCAAGTGTTCAGGATTGGAAGTAGATCATGAAGTTGTTGTTGACAACATTTCAAAATCAACAAAATCGTCTAAAAAATTATATCAATGCGACAAATGCAAGCATACATTTCCGCATCTGTCAGAATTTCACAAGCATATGATTAATCATAATAACCCTGAAGGTCGAGCCATTGGACCTGCCAACTTGATGTGCTCTAAATGTGGGAAGAAATTTAAAAGCCATGAGAAATTCGAAATGCACTGCCTTGGACACGGAAATCCAGACCTTGAATGCCCTAAGTGCTTCAAAGTTTACTCTTCAAAAGGCAGTTTAAAAGTCCACTTGAAAATTCATGATCGGAAGTTCCCCTGCGGCTATTGCATAAGAACATATGCCACTGCGGAAGAACTAAAGACCCACATTAGGAAAGTCCATATTCTAAAGACTTGTAAATATGAGCAATGCTTGTTTGTGACCAATAATTCACCAGATTTGGTAGAACATCTCAAAAGTCATATTTCTACACTTAATAGTCATACAGACAAGGAGTCACTACAAAGCCATAGTAATATGGAGATACTAAAAAGTCATAGAAATAGGGAGCCACTACAAAGTCACAAAAATATGGAGAAACTTGAAAGTCCTAAAATGATTGAAACACTAAAAAGTCATAGAGATATAACTAATGATATCGATTTTAGCAACATTTATTATGAAGATGTTAGCGATGGTGACATTCAGCCTAATGATTCGATTGGTTTAGACGACGATTGGAAATGGCAGTCAAATGAATTGGCAATAAACGGTGATGAGGGAAGCCAGGTTGAAAAGGCTAACTCGGTGATAGCTAAGGTCATGTCCAATAAGATGTTCCTCTTAAACTCTAAGAGTGCTAAGAAGGTCTTTAAAGGTTATAAGACATGTGACGTTTGCTACAAATCGTTCACCCGCATCAGCGACCTGAAGCGTCATCTGATTGAACACGTGATTCGCTCCACACTTACAAAGTCACCTGTCTCAAAAAACGGAATGCTACATATTCTCTGTGAGATCTGTAATGTGGAGACCTTCACCAAGGTAGACAAATACAAAAATCATCTACGCGAGCACGCCAATCTAACCCTTTACCAATGCACATTCTGCGACAAGTCCTTTAGCGACTCTTCCAACTTTTCCAAACACAAGAAAACCCACGGCTTATCGTTCTATCACTGCGATTTGTGCCAGCGCAAGTTTCATTCGAAGAAAATGATCATACAGCACATGGAGTATCATAACAAAAACAAACCTTTAAATTGTCGCGATTGCAAGAAGAATTTCCACTTCAAATCTTGTTTGAACAAACACATGAAAAGCGCTCACAATAAACCGGCAAAATATAATTGCAAATTTTGCGATGATGTCTTAAAGACTTTGAAAGACAAATGGGACCATGAGTGGGTGGTGCACAACATCAGAAAATCTATTATGGATTGCATGGAGTGTGAAGCAAAGTTCCGCAAATATTCGGAATTGAAGAAGCACTGTATTCATGACCATGGTATTATCATCAGGTGCGAGAGAAATAAGTACAAAAAGAGAAAGAGGTTTTATTGA
Protein Sequence: MDLEDVLYSNLVYPILLMPKSCTTLDTDFDKSNDVYIEVKITTPDTAGNLTCIYAGLCKIKLFETEENQNCIKSPQNDISSLSMNNIDVDQLPIIFSETSPPAFSTYNQSEVWIDPCRSPFVYNRCESPSQEECFIRQSKGQITVNKHNTYITQNVYNYNEADILTNKEQQQLIDDSDQNIYENDDFNCETYLSILAEETLNEEHNRTREDHSLIRPNVENNALKQLMSEDIQPISKQQKVILFSGNDSESGHTIQNISYSDPLVKCSGLEVDHEVVVDNISKSTKSSKKLYQCDKCKHTFPHLSEFHKHMINHNNPEGRAIGPANLMCSKCGKKFKSHEKFEMHCLGHGNPDLECPKCFKVYSSKGSLKVHLKIHDRKFPCGYCIRTYATAEELKTHIRKVHILKTCKYEQCLFVTNNSPDLVEHLKSHISTLNSHTDKESLQSHSNMEILKSHRNREPLQSHKNMEKLESPKMIETLKSHRDITNDIDFSNIYYEDVSDGDIQPNDSIGLDDDWKWQSNELAINGDEGSQVEKANSVIAKVMSNKMFLLNSKSAKKVFKGYKTCDVCYKSFTRISDLKRHLIEHVIRSTLTKSPVSKNGMLHILCEICNVETFTKVDKYKNHLREHANLTLYQCTFCDKSFSDSSNFSKHKKTHGLSFYHCDLCQRKFHSKKMIIQHMEYHNKNKPLNCRDCKKNFHFKSCLNKHMKSAHNKPAKYNCKFCDDVLKTLKDKWDHEWVVHNIRKSIMDCMECEAKFRKYSELKKHCIHDHGIIIRCERNKYKKRKRFY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -