Basic Information

Insect: Apeira syringaria
Gene Symbol: -
Assembly: GCA_934045895.1
Location: CAKOGY010000315.1:29757-73335[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 6.1 5.1e+02 1.9 0.4 1 8 195 202 195 218 0.82

2 18 7.1 5.9e+02 1.7 0.6 2 23 681 701 681 701 0.91

3 18 0.00025 0.021 15.7 1.3 2 23 752 773 752 773 0.96

4 18 0.11 9.5 7.3 0.4 2 23 791 812 790 812 0.96

5 18 6.4e-06 0.00053 20.7 2.6 1 23 818 840 818 840 0.98

6 18 0.00014 0.012 16.5 0.4 2 23 846 867 845 867 0.96

7 18 0.0081 0.67 11.0 3.0 2 23 874 896 873 896 0.95

8 18 0.012 1 10.4 2.3 3 23 935 956 933 956 0.93

9 18 0.11 9.5 7.3 3.8 1 23 1201 1223 1201 1223 0.92

10 18 0.00053 0.044 14.7 0.4 2 23 1229 1250 1228 1250 0.94

11 18 5.7 4.8e+02 2.0 0.6 2 23 1274 1294 1273 1294 0.82

12 18 0.083 6.9 7.8 0.5 3 23 1344 1364 1343 1364 0.96

13 18 0.22 18 6.4 0.2 2 23 1382 1403 1381 1403 0.96

14 18 1.3e-06 0.00011 22.8 1.6 1 23 1409 1431 1409 1431 0.98

15 18 0.00012 0.01 16.7 2.0 2 23 1437 1458 1436 1458 0.96

16 18 0.0036 0.3 12.1 4.6 2 23 1465 1487 1464 1487 0.94

17 18 0.64 54 5.0 1.0 1 19 1494 1512 1494 1513 0.82

18 18 0.053 4.4 8.4 3.3 3 23 1526 1547 1525 1547 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	6.1	5.1e+02	1.9	0.4	1	8	195	202	195	218	0.82
2	18	7.1	5.9e+02	1.7	0.6	2	23	681	701	681	701	0.91
3	18	0.00025	0.021	15.7	1.3	2	23	752	773	752	773	0.96
4	18	0.11	9.5	7.3	0.4	2	23	791	812	790	812	0.96
5	18	6.4e-06	0.00053	20.7	2.6	1	23	818	840	818	840	0.98
6	18	0.00014	0.012	16.5	0.4	2	23	846	867	845	867	0.96
7	18	0.0081	0.67	11.0	3.0	2	23	874	896	873	896	0.95
8	18	0.012	1	10.4	2.3	3	23	935	956	933	956	0.93
9	18	0.11	9.5	7.3	3.8	1	23	1201	1223	1201	1223	0.92
10	18	0.00053	0.044	14.7	0.4	2	23	1229	1250	1228	1250	0.94
11	18	5.7	4.8e+02	2.0	0.6	2	23	1274	1294	1273	1294	0.82
12	18	0.083	6.9	7.8	0.5	3	23	1344	1364	1343	1364	0.96
13	18	0.22	18	6.4	0.2	2	23	1382	1403	1381	1403	0.96
14	18	1.3e-06	0.00011	22.8	1.6	1	23	1409	1431	1409	1431	0.98
15	18	0.00012	0.01	16.7	2.0	2	23	1437	1458	1436	1458	0.96
16	18	0.0036	0.3	12.1	4.6	2	23	1465	1487	1464	1487	0.94
17	18	0.64	54	5.0	1.0	1	19	1494	1512	1494	1513	0.82
18	18	0.053	4.4	8.4	3.3	3	23	1526	1547	1525	1547	0.94

Sequence Information

Coding Sequence: ATGTCCGTAATGAGAAAAAGGACTAGAAAATGTAAATTGGAGCCTCGAAAAGATGTTGATTGTACCGAATCTTTGGACAAAACTGATAATACAAAATTGCAGCAACTGCCATTACTCATGCAGTCTAGGAGGGATTCTTTGAACCTGGACCATACATATTCATTGCAGATTTCCACTCCATCATTACAATCACCCATGAAGCTCTCTGTCAAGGTAGAAGTGGAAGAATTTGACGAGTCTATCATGGACACAGACCCAATAAACACAAATGATAGCTTACAAACCTTCGTGCCGGGACCTTCCAACTCCATAGAAATGAACAAAAAAGTGTCAAAGAGACATAGTTCCCTGCAAGTCTTCCATGTAGATATTGAAAAGATGTACAAAATTTCTGATCACATATCCTGGAGTTCCTCCAACCCAGCAGATAAATACTTCAACATTGAAATAAGGAACAGTTGGGGTCATATATTCAAACTGGAAGAAGATAACGAGCCATACAACGCTCTGATACAGAAGGCTCTGAACGCTTGGGGCCTTGCATTGATCAACGGACGTCAATGGAGGGAGAGTCCTCTGTTCTATCAGTGTCACATTTGCAACCTTGCTTGGTGGCATCTCCAACCTTTCAAGGAACACATAAAGCAGATGCACGATCATAGATATCTCAAAGTGTATCATCAAGCGAACATGCAAGAGTCTATTATAGTCGCGAGCAATTGCTGTAGCAGTGTTGTAAGATATATCCCATGCGAAGGGAACTGCTACAGGTGTGGGGTTGATTATGAATCCCACATAAAAAGGCAAAACAAATCATACACATGTATAAAATGCAATGGAACGTTTGAGTTGTGTTTTCAGTATATGAAACACCTGCTCACATGCATCCATAAGAAGCCATATAAGACGCCGCCAAAATTTATGACCTGCAACATATGCTTCTTTCCATATCTCAATGAAGAAGATATGTATACTCACAAAGCTAGAACTCATGTAGTACGATCGGACGAACCCAGCCAAATCTCATACAAGACATGCACAGTAATAATACCAGATAAATATCCGCGTTTGAACTACATCCGTGGCGAAGACGTGGCGGCCGCTTGCCAAGAATTGCAATCTCAGGAAGACGATTTAGACGCCGAGTCAAGTCAAATCAATCAAAAAGAAGGACAGGAAAGCTTTGAAATCCTGCCAGAGGATATATATATAAAGAAGGAGATGGAAGAGGTGGAAGACTATAGCATCGGGGACGAGAGCCAAGACGAAGAACCTGACGAATATGAACAGATGTTGTCCAAAGTGTTTAAAGTGACCGACGGACGAAAGTATCATCGTGTCAAGGATGCAGTGGAAACACAGCTAATAAAAATAAAGACTGAACCCTTAGATAGAGAAGACGTTGCAAACCGGATAGAATCACAAGAGAACTCGATGAAAGATATTCTTAAAAAAAAGAACATAATGCAAGAGAACTTAATTCAGGGGAACCCAATACAAGAGAACACGATACAAGAGAACATGATACAAGAGAACACGATACAAGAGAACACAATACAAGAGAATCTAATACAACAGAAAGTAATACAAAATATTCAATTCCATGAGAACCTAGTGACAATCAAACAAGAACCTATAGAAATCGACGGGACATGCAGTATTGACGATGAGTTTGAACTGTGTGACATTAAGGCTGAGCCAATAGAGATCTCCATCACCAATACTGAGGACTGTGCAGTCAGCGCCGTTGGTGACGAAGTCATTAATGTATTCAAAATGGAATCAGAAGAGGTGAGGCAGGATTTCTTCGGAGAAACAGACATAAATTGTGTAGAAAAAGTCACTGAAGAAACCCCAGCAGAAACACCAGCTAATACTGAAGTAGACAAAACAATTGGTAAACAGAAACTAAGGAAGACGCTCAAAACTTTTACTAAAGCTTACCCGGGGGATAAGGTCAAATACATAATTCAACAGAAGCTTTTGAAGGGTGAGATGGTACCATTAAAGAAGGCAATCAAAGGAGTTAGACAGAGAAGGAGGTGCCAACAATGTCTCAAGATCGTGAATAGCAGTGATTACTTCTCTCATTGGGAGAGCCATCTGGTTTTGATGAAGAATGGTCCAATGAAACCTGAACCAGTGCCTGAACCAGAAAGTGTTGGAAAACTCATAAACACCAACAAGAAATTGCTGCATGACTCCGTGTTACAAATACTTCTGAAACAACTCCTCGGCGTATCGTACGAGCGGAAGTGCTTGATTTGTGAGCGCCAGTTCAATCGCAATTCTGACTTCAAACGGCACCTTATAGAGCATCTGCTCTCAGATGCATATGTCAAGAGACTGGTCGCACCCAATAAATCTCTCAGATGTCAGATCTGCTCTCAGGAGTTCGGACTCATGGTGAAGTACAAGGTGCACATGCGCGAGCACGGCAACCTGCCCGTCTATAAGTGCCAACTGTGCGATAAGTACTTCAGCGATTCCAGCAACTTCGCCAAACACAAGAAAATACACAGTCTCCAGGTGTTGATATGCGATATCTGTAAAAAGAAGTTCCAAGCCAAGTCTCAATTAGTAAAGCATATTTTGATGCATCAAGTGACGAAGCCAATAAAGTGCAAACCGTGTGGAACTAAGTACTACACTAAGTCGCAGTATAACAAACACAGGAAGAGTCGGCATGGCGACCGCCCCTTCAAGCCCAGATGTATACCGTGCGATGTAAGTTTTAACAGTCTGCGCGAGAAGTGGGACCACGCTTGGAAAGAACACAAAGAAAGGAAGCATAAAATCGACTGCCCCGTATGTCATCAGGGGTTCAGGAAGTTTCACGATTTGAAAACGCACGCAAAGGGAACCCACCAGATGGACATTACTGCcttcacgAAGAAGAGGCGAAAAGCTTGGATTAAGAACAGGACCAAACTGAATGACTATGAGCAGATGTGGCTTGACGCGTTTGAAACGGCGAGCGGCCAGCCTGTCAACGTTGCAGCAGAACCACAGGCAATCACAATAAAGGCGGAACCTTTAGACAGAGATGAGTTCGAAAACCTGCTAGACATAGACGAGAACTCCGTCACGATCAAAGAAGAACCGATAGAAGTAGACGCGACGTGCTATATAGACGAAGATATGCAGCTCCGCCATATTAAGGCTGAGCCGATGGAGATCAGCGCTACCGATGTAGAGGATTACGCAGTCAGCTGCTCAGGTGAGGAACCGATTCTTACGCCTGAAGAGGTGAAACGTGAACTGATAGAAGCTACAGACATGATGATCATCGACAATGTCACCACAGAACCTCCTCCGATGACATTTGCCAATATGGATATAAATAAAATAAAAATTGCTAAGAAAAAACTAGTCAACGTTCTGACGGAGGCATACTCGGGGGATGGACAGAAGTGTATTGTTCAACAGAAATTTGTGGGGAATGTAGAATGGGTGCCGCGCAAAAAAAAGATCAAACGCGAGCGAAAGAGAAAGCTGTACAGATGCGCGAAGTGTGGTTATACGAACGAGCACAAATTGTACCGCATACATAAGGAATCCCAATGTAAAACGTCACCAGGATCCATTGGGAACGATTCTTTTTTATGTACCAAATGTGACACGACCTTCTGCAATCTAAAGCTCTATTTGGTGCATTTTGACAGTCATGGTTATGAATCGCTTAAGTGCCCCGGGTGCAATAAGAATTTTGATAGTATGGAAGATTTGAAGAGCCATTTTCTTCTCCATGTAAAGAGGTGTTTTGTCGGCTTATGGGTGAGCGATAACGAATCGAACGACTCCACGAAGATGCAAAAAGAGTGCAAAAAGTGCTACGAGTTTGTGGATTCGAAAGATTTCTTCGCACATTGGGAAAGCCATCTCCTGTTGAATAATGGAGCTGTTGAAGCAACAGTAACTCAACCGGTGACTGCTGAGCATATCTCAACCCCCAACAAAAAAATGCTGCAGGAACCCATGTTGTCCGCAGTCTTGAAACAACTCCGCAGCGTGGCGCACGAGAAACTATGCTTGATATGCGTACGCCAGTTCATCCGAAGACTAGACTTCAAGAGGCACCTCATAGAGCATCTACTCGCCGACGCATATGCCAAGAGACCCATAACGCCAACTAAGATGCTGAGGTGTCAAATCTGCCAGCGAGATTTGCCGAGCATGATTCAGTACAAGGGCCACATGCGGGAGCACGGCAACGTCCGCTTTTTCAGCTGCCAAATCTGCAATAGAGACTTCAGTGACTCGAGCAACTTGGCCAAACACAAGAAAACACACAGCGTCGAGCTGCTGATTTGTGACATTTGTCAGAAGAAGTTCCATGTGAAGCGGCAATTGGAGAAACATATGTTGATGCATCAAGTGACGGAGCCGGTTCAATGTACGCAGTGCGGATTGAAGTTCTTTACTCAGTCGCAATATAAAAAACACGAAAAGCATAAGCACAAGAATCACAACGCTAAGTTCAGATGCGTGACGTGCGGTACGTGCTTCGACAGTCTTCGCGAGAAGTGGGACCACGCCTGGATTGAACACAAGGAACGGAAGCATAAGGCCGACTGTCCCGTATGTCATCAGGGGTTCAGGAAATTCATGGATTTAAAACATCACGCAAAATTGTTTCACAACATGGAAATGCCCTCCTTCAGGGTACGCTCGAAGAACAAGAGAGCTGTGAAACGGAAGTCAAAATCTAAGAAGAAGAAACAAGAGACGTTACTTGTTCCCCTTGGTGTCCTTAAGGAGTCATAA
Protein Sequence: MSVMRKRTRKCKLEPRKDVDCTESLDKTDNTKLQQLPLLMQSRRDSLNLDHTYSLQISTPSLQSPMKLSVKVEVEEFDESIMDTDPINTNDSLQTFVPGPSNSIEMNKKVSKRHSSLQVFHVDIEKMYKISDHISWSSSNPADKYFNIEIRNSWGHIFKLEEDNEPYNALIQKALNAWGLALINGRQWRESPLFYQCHICNLAWWHLQPFKEHIKQMHDHRYLKVYHQANMQESIIVASNCCSSVVRYIPCEGNCYRCGVDYESHIKRQNKSYTCIKCNGTFELCFQYMKHLLTCIHKKPYKTPPKFMTCNICFFPYLNEEDMYTHKARTHVVRSDEPSQISYKTCTVIIPDKYPRLNYIRGEDVAAACQELQSQEDDLDAESSQINQKEGQESFEILPEDIYIKKEMEEVEDYSIGDESQDEEPDEYEQMLSKVFKVTDGRKYHRVKDAVETQLIKIKTEPLDREDVANRIESQENSMKDILKKKNIMQENLIQGNPIQENTIQENMIQENTIQENTIQENLIQQKVIQNIQFHENLVTIKQEPIEIDGTCSIDDEFELCDIKAEPIEISITNTEDCAVSAVGDEVINVFKMESEEVRQDFFGETDINCVEKVTEETPAETPANTEVDKTIGKQKLRKTLKTFTKAYPGDKVKYIIQQKLLKGEMVPLKKAIKGVRQRRRCQQCLKIVNSSDYFSHWESHLVLMKNGPMKPEPVPEPESVGKLINTNKKLLHDSVLQILLKQLLGVSYERKCLICERQFNRNSDFKRHLIEHLLSDAYVKRLVAPNKSLRCQICSQEFGLMVKYKVHMREHGNLPVYKCQLCDKYFSDSSNFAKHKKIHSLQVLICDICKKKFQAKSQLVKHILMHQVTKPIKCKPCGTKYYTKSQYNKHRKSRHGDRPFKPRCIPCDVSFNSLREKWDHAWKEHKERKHKIDCPVCHQGFRKFHDLKTHAKGTHQMDITAFTKKRRKAWIKNRTKLNDYEQMWLDAFETASGQPVNVAAEPQAITIKAEPLDRDEFENLLDIDENSVTIKEEPIEVDATCYIDEDMQLRHIKAEPMEISATDVEDYAVSCSGEEPILTPEEVKRELIEATDMMIIDNVTTEPPPMTFANMDINKIKIAKKKLVNVLTEAYSGDGQKCIVQQKFVGNVEWVPRKKKIKRERKRKLYRCAKCGYTNEHKLYRIHKESQCKTSPGSIGNDSFLCTKCDTTFCNLKLYLVHFDSHGYESLKCPGCNKNFDSMEDLKSHFLLHVKRCFVGLWVSDNESNDSTKMQKECKKCYEFVDSKDFFAHWESHLLLNNGAVEATVTQPVTAEHISTPNKKMLQEPMLSAVLKQLRSVAHEKLCLICVRQFIRRLDFKRHLIEHLLADAYAKRPITPTKMLRCQICQRDLPSMIQYKGHMREHGNVRFFSCQICNRDFSDSSNLAKHKKTHSVELLICDICQKKFHVKRQLEKHMLMHQVTEPVQCTQCGLKFFTQSQYKKHEKHKHKNHNAKFRCVTCGTCFDSLREKWDHAWIEHKERKHKADCPVCHQGFRKFMDLKHHAKLFHNMEMPSFRVRSKNKRAVKRKSKSKKKKQETLLVPLGVLKES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -