Asyr005558.1
Basic Information
- Insect
- Apeira syringaria
- Gene Symbol
- -
- Assembly
- GCA_934045895.1
- Location
- CAKOGY010000053.1:35939-47048[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0073 0.6 11.1 1.2 3 23 31 51 30 51 0.96 2 14 0.00026 0.022 15.6 0.3 1 23 89 112 89 112 0.93 3 14 0.0025 0.21 12.5 1.1 1 23 114 136 114 136 0.97 4 14 7.9 6.6e+02 1.5 0.1 1 23 149 171 149 171 0.89 5 14 0.01 0.84 10.6 0.1 1 23 176 198 176 198 0.97 6 14 5.6 4.7e+02 2.0 3.8 1 16 256 271 256 278 0.81 7 14 0.0002 0.017 16.0 0.2 1 23 284 307 284 307 0.92 8 14 0.0047 0.39 11.7 0.7 1 23 316 339 316 339 0.95 9 14 0.0041 0.34 11.9 0.2 2 23 346 369 345 369 0.94 10 14 0.13 11 7.2 0.2 3 23 379 399 379 399 0.97 11 14 3.2 2.7e+02 2.8 0.2 1 15 404 418 404 423 0.75 12 14 0.00029 0.024 15.5 0.3 1 23 432 454 432 454 0.96 13 14 0.0016 0.13 13.2 2.7 1 23 462 484 462 484 0.98 14 14 9.3e-05 0.0077 17.1 0.7 1 23 490 513 490 513 0.95
Sequence Information
- Coding Sequence
- ATGGCTTTACCCATAGCTTCTAGACCTGTGGGGGGACTCCAAAATTGCATACCAAAGCTAACTGCTGTTGAGAAAATTGGTGGAATATTATGCCACATCTGTAATTACATATTTGGAAATAAAAAAGATTATGACCGTCACTATGCTCTCCATAATATTGAAGGAGCAGAAGTTGTGTACACATGTGTGGCATGCAAGAAGCAAATATCTGGTTATCCAAGTTTCCGTGGCCACTGCTATCTCAACCATGTGGTGAAGAACAAGTTTCAATGTAATCAGTGTGACAAAAGTTTTGCTAAATTGTCCATTCTCAATAGCCATATTTCTGCTGTACATGACTACAAATGTAACTCCTGTGAGGACAGATTCAGCTCAAAAAAAGACTTGGAAACACACAAAGCTATCCATGGCACAGTAAAAAAAGACATTAAGGATGAGCCACCGTATAACTGTGTTTTCTGCAACAAATTAATCATCACCATTGTCGAATACGAGAGCCACATCGACGACCACTGCGAGGTCCACTACCCATGCCCTATTTGTAAGGAAGTTCTCCCAAATAAACTGGAAGCCACCAAACATTTGACAAAACATTTTGACCAAAATATCTCAAGCAACATTTTGGCGGAAGTACAAACCACCAGTAAAAATAGTTCCATAGATGTGTTGGGAGGCATCTTATGTTGCCATTGCCACTCGTTGTTTCCGAACAGGTCCGAGATAGACGCTCATTTCTCCATGGAGCATGAAGATAAAGCCATTGTCTACACTTGCAACATTTGCGAAAAGCAGTATGAGAAATATGCCATGTTTGGCGATCACTGTCATTTTCACATCTCCAGGGACAGATTCCAATGCGACGAATGCGAGAAGAACTTCCCGCGGCTGTCGCTGCTCGTGCTGCACACGGAGGCGTTCCACACGGGCTCCGCTCCACGCAAGCCGTACTCGTGTGGACCGTGCGGCCACCGGTTCGACACCCGCCCTCGCCTGCGCGAGCACATGCGCCTCGTGCACGAGGAAGAAGCGCCCATCCAGTGCACGCAGCCCGGCTGTTTCGCCACGTTCTCCCGGCCGCGCGAGCTGGTCGCGCACAGCAAGCGGCACGCAGAGGCGGCGGGCGGGGACGCGTGGTGCCGGCAGTGCGGCCTGCACTTTGGCAGCGCTGAGAGCGCCGCACGCCACCTCGCCGTACACTCGCGTCGCCAGTACCGCTGCGGCGTGTGCGCGCGCGCCTTCCACCTCCGGCACCTCGCGCTCAAGCACGCGGCGCCGCACTTCGCGCGCGAGAAGCACGCGTGTGCGCTGTGCGGGCGTGCCTACGGGCGGCGAAGCCGCCTTGCCGCTCACTTGCGCTCGCACGCCGCCTCTGCCACGCGCCGCCACCAGTGCCAGCTCTGCGACAAGGGCTTCCTCAAGCCGCACGAGCTGCGACAGCACCTCAACGTGCATGCAGGCCGCCGCCCCTTCCTCTGCCACCTGTGCCCCCGCGCCTTCACCAACCGCCCTAACTGGGCCAAGCACCTGATGCGCGTGCACGGGCTCGATGCGCCCGCCGTGCGTCGCCTCGCCGTCAGCGACCCCGCCCTGACGGACCCCATTCTCGCCCCGCCTGACCACTCTCTCGCCCCGCCAGACCCCACTCCCGCCTCCGCCGTGCCCGACCTCACACCCGCACCCGCCCTGCCCGACCCCGTCCCGCGAATGTTTGAAGCGGCGAACGAAAAGAGCGACTTCAAGCCGATAGTGGATCACATCGACGCTAAGACCGACGTCAAGCCGATAGTGGATCCCATCGACGCTAAGACCGAGGGGCTCAACCCCCCGGAGCCTCCGAGTTTGACCGTCGACGCCGAAGATGAACTCCGGTTCGCCGAAATGACGCCGGTGACTGACGTCACATTTCTCACCGATACGGTACAAAACATTCTGGAAGATGGTTCATACGCAACAAGCATTTGGTTCCCGGAGAGCGGTCCGGATTTCAAGGGGTTGGGGATGAGGGTGCTTGGTGAGGAGTTCAATCTGGAAGATCACCTGATGCCGCACATCGACCCTCGGCTAACGATCCGCACCGACGATGACGTGAAACTCTACCTAGATAACATTGACAACTTAAAGATCGATCACGTCACCCCCCTACCCCCCCACACCTCGCCGTACCCCTCCCCCGCCCCCGACGACGTGTATGAAGCGTTCGGGAGTAATGTAGAGAACGAGTACAAACAGAGATGTTATTTATCGAGAATGAATAGAGATAGAGGCAGGGTTCGACCGGGCGTGACACACGGGCGGCTCGGTCGCGAGCTGACGTTCGGAGAGTCGGGCCGCTCCCCGAGCGTGACGCCCGAACTCTAA
- Protein Sequence
- MALPIASRPVGGLQNCIPKLTAVEKIGGILCHICNYIFGNKKDYDRHYALHNIEGAEVVYTCVACKKQISGYPSFRGHCYLNHVVKNKFQCNQCDKSFAKLSILNSHISAVHDYKCNSCEDRFSSKKDLETHKAIHGTVKKDIKDEPPYNCVFCNKLIITIVEYESHIDDHCEVHYPCPICKEVLPNKLEATKHLTKHFDQNISSNILAEVQTTSKNSSIDVLGGILCCHCHSLFPNRSEIDAHFSMEHEDKAIVYTCNICEKQYEKYAMFGDHCHFHISRDRFQCDECEKNFPRLSLLVLHTEAFHTGSAPRKPYSCGPCGHRFDTRPRLREHMRLVHEEEAPIQCTQPGCFATFSRPRELVAHSKRHAEAAGGDAWCRQCGLHFGSAESAARHLAVHSRRQYRCGVCARAFHLRHLALKHAAPHFAREKHACALCGRAYGRRSRLAAHLRSHAASATRRHQCQLCDKGFLKPHELRQHLNVHAGRRPFLCHLCPRAFTNRPNWAKHLMRVHGLDAPAVRRLAVSDPALTDPILAPPDHSLAPPDPTPASAVPDLTPAPALPDPVPRMFEAANEKSDFKPIVDHIDAKTDVKPIVDPIDAKTEGLNPPEPPSLTVDAEDELRFAEMTPVTDVTFLTDTVQNILEDGSYATSIWFPESGPDFKGLGMRVLGEEFNLEDHLMPHIDPRLTIRTDDDVKLYLDNIDNLKIDHVTPLPPHTSPYPSPAPDDVYEAFGSNVENEYKQRCYLSRMNRDRGRVRPGVTHGRLGRELTFGESGRSPSVTPEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -