Asyr008281.1
Basic Information
- Insect
- Apeira syringaria
- Gene Symbol
- -
- Assembly
- GCA_934045895.1
- Location
- CAKOGY010000081.1:1659769-1686245[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.079 6.6 7.8 4.1 1 23 584 606 584 606 0.98 2 11 0.0016 0.13 13.2 1.4 1 23 613 635 613 635 0.98 3 11 0.023 1.9 9.5 1.1 1 23 639 661 639 661 0.98 4 11 0.00083 0.069 14.1 2.4 1 20 666 685 666 687 0.95 5 11 0.0034 0.29 12.1 1.4 2 23 697 719 696 719 0.94 6 11 0.12 9.8 7.3 0.2 2 20 732 750 732 754 0.93 7 11 2.8 2.4e+02 2.9 0.4 1 23 782 805 782 805 0.89 8 11 7.4e-05 0.0061 17.4 0.1 3 23 822 842 821 842 0.98 9 11 0.0002 0.016 16.0 1.2 1 23 848 871 848 871 0.96 10 11 1.3e-05 0.0011 19.7 3.9 1 23 876 898 876 898 0.98 11 11 0.00014 0.012 16.5 0.9 1 23 904 927 904 927 0.97
Sequence Information
- Coding Sequence
- ATGAAGCTAGCGCGCCACCGGCGCCTGGCCGCTGAGCTCTGTGTGGCGGTGGGGGAATTAGAACGGGGCGGAAGTTACGTCACAGCTGTCGAAAAGGAGGGTATAAGCGTGTTGGCTCTGGAAGTCGAGTTGGCATGCACTCTGGACCCTCTGTACTGCACGATGTGTGAACATATGCTGCGAAAGGTGTATACCTTTAAGAATAGATGTTCTAAGGCCAATAAGATACTTCAGAACTGTAAGAAATCAAAAACTCCTAAAAACCAGCTATACACCCTGTTACCGACACCTACACTCGGCAAGTGGCAGGAGAGAAATGCACGTGTCTACATGTTCACCTACTCAGATCAACCCATGTTGACCATCAACGGGAATCAAATTCTACCAATACCAAATAGTAATATTAAACTAGAAGACGAACACAATCACACCGATCAAGTTGCAGTACCGAATGTATTCAATGAAAAGGAGATATCAATACGTTGCTTTAGTACTCACTGTAATGTCACAGATGCGAAAGACCCATTAATGACCATAGATGATATCAAAGTCGAAAATGACATAGATAATAAAACAGAGACTGTTTCTAACGACTTGAAAATCCTAATTGAAACTGACAATGTGGTACAGTCCAAAGATGAGAAGAAGCGTACAGAAAACGTTAAAATACTAGATCTGTTAAAAAGGGGAGATGATAAAGTGGAGACATTAAACGACAATGGAATCGAAGATGCCAAAGTAGAACTTTTAGATGATTTACTCCCAATTGATTTACCAGATGATGCAAGCTTGAACAGCGGGGATGATTGCGACTCGGATGATTTCGTTCTAAACGATTTAATTTATAATAAAAGAAAAAGTATCAAAGAAAATCAGCAGCAAAAAGGTAAAACGAAGGAACACTTGAGAAAAACGGACTGTGTCAAAAAGTCTTTACTCGAATTGGCTAACATGTCGATATCAGATGATGAATTGTTGAGTGATGAAACTGAAGAAGTTAAGAATATTAGAACGAGGAGGAACTTAAAAAAGAGGGTGGTTAAAAAAGTTGATAAAGGGAAGGTGACAAAGAAAAAATGGGATCGTGCTAAGGTATTGAGCGCAAAGGAGTTGGAGGAGTTTGCAACCGGAACGTTGGGACCTTGGGTGCCGACACGGCGACACCCTGGTCATCTTCCTCTCTCGCTGCTCTGCGCTTACGCAGCATTCTTGTTGAGCCACGAGACGAATTTGTCTCCCAGCTCATATTGTCAGAGTCTTCCGACGTGTTTTGAGTCGGAATTCGACACTCCGAAACGGGCCGTTCGCCCGAGACTTCCCGAGGGTGCTCGCTTTCATCAGCTGTACTTGATGGGGGAGTATCACAGCGGGGTGGCCGAGTTGACCCTCCCTGCCGCGCCGCCGGCCTTGCAGGCCGGCCATCCTCCGACCCGAAGGTTAATAGTCAATCTAACCGCAAAGTTCAAATCATGCGGAGAGTTGAAGACTGAAGACGGCACTGTGATAGACAAGGAGTGTATATTGAACACTGTTCGCGAAGTAGAACCGGCAAAAGAATTCAGGGAACTGTGGGACGAAGTGCGTGGTAGTACGACTCTAACGGCGAAAGCTATATCGCTGCTAAACTTCATAGAAAACAAGGACAACGAATATAAAACTGTTTTCGATATACAATATTTGAACACCGAGGAGAAAATGTTGGAAGAGTTTGAGAAACGGCGCACTTATAAAAGCTACGTTGACGCCGAGTTCAAGTGCGATCACTGCCTTCAATGGTTCAAATTTAAGAAGCTTTTGGAGTATCACATGAAATGGCATGACGAGAAGTCGGGCGAGTTCGCGTGTCCTGTGTGCAAGACCCGGAGGAAAACGCGCGTGCGATTAATGCAGCATATGAAGACTCACAAGACTGTGTACAAGTGCAAGCTCTGCCCCCTAGTCACTAACTACAGGGGCTCCATGTTGAACCATTTCCGTCAGCATCAAGGAGTAGAGTACAAATGTGAACTCTGCAACCTAACATACAAGAGTAAATCTTCGTTTAACACCCACCGTACAAAGATGTGCACCATGGAACAGCGGAACTTGGTCTGCACGTACTGCGCGCGGACTTTCATGCACAATAACGGACTCAAACTGCACATACAACTCAAGCACAGGGATGAGCTCCCCATAGACGAAGCCTTCGGTGGGGTATGTACCCAGTGCTCGCTCGTGTTCGCGTCCAAGGAAGTGTTCGAAAAACACCTTTGGATATCACACAAACAGGGCGATGCTGCACAGATTACGAGAACATTCAGGGAAAGGAAAAGAAAGCCTGGAGTGATGCGCAAAGCTTCAATCCACACTTGTCGGGTGTGCAACGCGAATGGTACCAGCTATGGATGGTTGACGCTGCACTTCGAGTTGGAACATCCGACTGTCGACATGGCCTCGCTCTACTCGGACAAGGCCAAGGTGCTGTGTGATGTCTGCGGGAAGGGATACTCGTCGGTGTACGCGCTGCGCGACCACATGAACGTGCACAGCGGCGCGCGGCCGTTCACGTGCTCGCTGTGCCCCGCCACGTTCCGCACACGTATCTACCTCACCTCGCACCGCCGCGATCAGCACGCGCCGCCGCGCTATGCCTGCAGCGCCTGCCACAAGCGCTTCCGCTCCAAGGGGAACCTTTACTACCACATGCGGACTCACATAGGCGACCGACGGTTCAAATGCTCCTTATGCGGGAAAGGATTCCTGCATCGTGGCTCCTTGAAGGAGCACATCCGTGGGGTGCATGATAACGTGCGACGGGTGAAGAAGCCGGGGGTGCGCAGGGGCGCCCCCGGGGGGGCTGCGGGGGCTAAGGAACCACACAGCGATACAGACTGA
- Protein Sequence
- MKLARHRRLAAELCVAVGELERGGSYVTAVEKEGISVLALEVELACTLDPLYCTMCEHMLRKVYTFKNRCSKANKILQNCKKSKTPKNQLYTLLPTPTLGKWQERNARVYMFTYSDQPMLTINGNQILPIPNSNIKLEDEHNHTDQVAVPNVFNEKEISIRCFSTHCNVTDAKDPLMTIDDIKVENDIDNKTETVSNDLKILIETDNVVQSKDEKKRTENVKILDLLKRGDDKVETLNDNGIEDAKVELLDDLLPIDLPDDASLNSGDDCDSDDFVLNDLIYNKRKSIKENQQQKGKTKEHLRKTDCVKKSLLELANMSISDDELLSDETEEVKNIRTRRNLKKRVVKKVDKGKVTKKKWDRAKVLSAKELEEFATGTLGPWVPTRRHPGHLPLSLLCAYAAFLLSHETNLSPSSYCQSLPTCFESEFDTPKRAVRPRLPEGARFHQLYLMGEYHSGVAELTLPAAPPALQAGHPPTRRLIVNLTAKFKSCGELKTEDGTVIDKECILNTVREVEPAKEFRELWDEVRGSTTLTAKAISLLNFIENKDNEYKTVFDIQYLNTEEKMLEEFEKRRTYKSYVDAEFKCDHCLQWFKFKKLLEYHMKWHDEKSGEFACPVCKTRRKTRVRLMQHMKTHKTVYKCKLCPLVTNYRGSMLNHFRQHQGVEYKCELCNLTYKSKSSFNTHRTKMCTMEQRNLVCTYCARTFMHNNGLKLHIQLKHRDELPIDEAFGGVCTQCSLVFASKEVFEKHLWISHKQGDAAQITRTFRERKRKPGVMRKASIHTCRVCNANGTSYGWLTLHFELEHPTVDMASLYSDKAKVLCDVCGKGYSSVYALRDHMNVHSGARPFTCSLCPATFRTRIYLTSHRRDQHAPPRYACSACHKRFRSKGNLYYHMRTHIGDRRFKCSLCGKGFLHRGSLKEHIRGVHDNVRRVKKPGVRRGAPGGAAGAKEPHSDTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -