Asyr003711.1
Basic Information
- Insect
- Apeira syringaria
- Gene Symbol
- kipf
- Assembly
- GCA_934045895.1
- Location
- CAKOGY010000032.1:484619-486094[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00032 0.027 15.4 3.0 2 23 180 202 179 202 0.96 2 10 0.00055 0.046 14.6 3.5 1 21 205 225 205 226 0.96 3 10 1.3 1.1e+02 4.0 0.3 1 23 250 272 250 272 0.92 4 10 7e-05 0.0058 17.4 0.3 1 23 278 301 278 301 0.96 5 10 0.0042 0.35 11.9 2.1 2 23 309 330 308 330 0.97 6 10 0.012 1 10.4 0.9 2 23 336 356 335 356 0.94 7 10 0.1 8.6 7.5 2.2 1 23 362 385 362 385 0.89 8 10 0.00012 0.0099 16.7 0.9 1 23 391 413 391 413 0.98 9 10 0.008 0.67 11.0 0.1 2 23 419 440 418 440 0.96 10 10 6.8e-06 0.00057 20.6 5.3 1 23 445 468 445 468 0.96
Sequence Information
- Coding Sequence
- ATGTTCAACAAAAATACGCCTATATGTCGTATATGCTTAAGCGAAATCGATCTTTCGGATAAATGCTATTATTTGTTTGAACGTAAAGAAGACACATTGGATTTAAAGTCTGATGATTTAATGCTATCAGAGAAAGTAATGGCCATTGCCAAAGTGGATCTAAAACAAAATGATGGTCTTCCAAACTTAATATGTTGTAGTTGCTTACTAGAACTTGAAGATGCATATAACTTTATAAAGAAATGTGAGAAATCGGACGATATCCTACGTATCGCCACGAACCAATACGGGTTAAACAATGAACCCCAAGAAGTTAAAAAAGAAAGTAATGAGGCATCACAAGTTGGATCTTTTGATGATGAGACTATCCCATTATCAAAGATGCAGCAGAGTGATGATGTTATACCAAATTGTGACAATATCAGACTAGAAGATGACAATGTCCAAGATGACAATGAAGCTTTCACAGAGTCTGAAGATAATTTAATGGATGAAAAAACTCCAGTTAGAGAAAGCAGAGCTATAGATCTCAAATTACAATGCGATGATTGTGGGAACTTTTTCAAAAGTAAATGTAAACTAAGAGTCCATTGGAAAAGGGAACATAACACTTATACATGTCCTCTTTGTAAGAGAATATTTAAAACCTGCAAAAGCTTTATAAATCATCAGAAAAATCCACCCTCTTTTTGCCTCTCATTAAGTTCTCCAATGGTCCATATTGAAGGTGAAGGCAAATCAAAGGTATTTAACTGTCGGGAATGTGGCTTTATTACAATATCTGTACACACAATAGTTAACCATCTAGTTGTACACTCAAAGGAACTTCCATACAATTGTGATCAATGTTCACGAGCCTTTTCACGGGTGTCAACACTGAGAGGGCACATAGAAAGAGCCCATAAGGTTTATTTTAGTCAAAAGACATGCACTGTCTGTGGATGTGTTATTTTTGGGAATAGTCAGTTCTGGACACATATGAGAAAGCATAATAAAAAAAAAGTATCATGTAAAGTTTGCAATAAAGTCATGACTTCGAGTTCCATGTTAAATCATATGAAAAGACATAGTGGAGTCAAAGCTTATTCATGTGGAAAATGCACTAAAGCATTTTACACAGCTGGTGAATGCTATGTTCATGAAAATAAAACGCATGGCAAAAAAAAAACTTATATATGCAAGGTTTGTGGATATGAACTGCATAATCCTTATAACTTGGCCAGACATGAGAAAAAGCATGGCTCCGGTAAAGTGAGTTGCACAATATGTGGGCAATTTTTGGAAAACCCTGTTCAATTGGCATTGCATAAAGAGCGGCACTTGGATAGACCACATAAGTGCGATCATTGTGATAAAACATTCTACCAAAGGAAGAATCTATTGAGTCATTTAAGAGATATTCATAAAATTTATATATCAACTGAAAGTAGCGCAATTGTCAAAAGCGCAAAGCGCCAAACAAAAAAAAGAAAGTGA
- Protein Sequence
- MFNKNTPICRICLSEIDLSDKCYYLFERKEDTLDLKSDDLMLSEKVMAIAKVDLKQNDGLPNLICCSCLLELEDAYNFIKKCEKSDDILRIATNQYGLNNEPQEVKKESNEASQVGSFDDETIPLSKMQQSDDVIPNCDNIRLEDDNVQDDNEAFTESEDNLMDEKTPVRESRAIDLKLQCDDCGNFFKSKCKLRVHWKREHNTYTCPLCKRIFKTCKSFINHQKNPPSFCLSLSSPMVHIEGEGKSKVFNCRECGFITISVHTIVNHLVVHSKELPYNCDQCSRAFSRVSTLRGHIERAHKVYFSQKTCTVCGCVIFGNSQFWTHMRKHNKKKVSCKVCNKVMTSSSMLNHMKRHSGVKAYSCGKCTKAFYTAGECYVHENKTHGKKKTYICKVCGYELHNPYNLARHEKKHGSGKVSCTICGQFLENPVQLALHKERHLDRPHKCDHCDKTFYQRKNLLSHLRDIHKIYISTESSAIVKSAKRQTKKRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -